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Report for CCDS4966.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4966.1 Public Homo sapiens 6 PHF3 24 110 108 CCDS HistoryNCBI Gene:23469Re-query CCDS DB by CCDS ID:4966.1Re-query CCDS DB by GeneID:23469See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4966.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262043.8 ENSP00000262043.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262043.8Link to Ensembl Protein Viewer:ENSP00000262043.4Re-query CCDS DB by Nucleotide ID:ENST00000262043Re-query CCDS DB by Protein ID:ENSP00000262043
Original member Current member EBI ENST00000393387.5 ENSP00000377048.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393387.5Link to Ensembl Protein Viewer:ENSP00000377048.1Re-query CCDS DB by Nucleotide ID:ENST00000393387Re-query CCDS DB by Protein ID:ENSP00000377048
Original member Current member NCBI NM_001370348.2 NP_001357277.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001370348.2Link to Protein Sequence:NP_001357277.1Re-query CCDS DB by Nucleotide ID:NM_001370348Re-query CCDS DB by Protein ID:NP_001357277Link to BLAST:NP_001357277.1
Original member Current member NCBI NM_015153.4 NP_055968.1 Accepted alive Link to Nucleotide Sequence:NM_015153.4Link to Protein Sequence:NP_055968.1Re-query CCDS DB by Nucleotide ID:NM_015153Re-query CCDS DB by Protein ID:NP_055968Link to BLAST:NP_055968.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357277.1 2039 Q92576-1 2039 100% 0 0
NP_055968.1 2039 Q92576-1 2039 100% 0 0

Chromosomal Locations for CCDS 4966.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 63646552 63646795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63680000 63680161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63684129 63685911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63691737 63692043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63694581 63694764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63698223 63698367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63698449 63698605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63700350 63700466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63702508 63702639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63703536 63703671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63706029 63706224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63706729 63706876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63709151 63709240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63711167 63711362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 63711586 63713708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6120 nt):
ATGGATATAGTTGATACATTTAATCATTTAATTCCTACTGAACACTTAGATGATGCCCTATTTCTAGGAT
CCAACCTGGAGAATGAAGTCTGTGAGGATTTTAGTGCAAGTCAAAATGTCTTAGAGGACTCGCTGAAGAA
CATGCTCAGCGATAAGGATCCTATGCTAGGATCTGCAAGTAACCAGTTCTGTTTGCCTGTTTTGGATAGC
AATGATCCCAATTTCCAGATGCCTTGTTCAACAGTTGTTGGTCTTGACGATATTATGGATGAAGGAGTTG
TTAAAGAAAGTGGCAATGATACCATTGATGAAGAAGAACTGATTTTACCTAACAGGAACTTAAGGGACAA
GGTAGAAGAAAATTCAGTGAGATCTCCAAGAAAATCACCTCGTTTAATGGCACAAGAACAAGTAAGAAGT
TTGCGACAGAGCACTATTGCCAAGCGTTCAAATGCAGCACCATTAAGTAACACAAAAAAAGCATCTGGGA
AGACTGTATCTACTGCTAAAGCAGGAGTGAAACAACCAGAAAGGAGTCAGGTTAAAGAAGAAGTATGTAT
GTCACTGAAACCTGAGTACCATAAGGAGAATAGAAGGTGCAGCCGAAATAGCGGACAAATTGAAGTGGTA
CCTGAAGTATCAGTGTCTTCAAGTCATTCTTCAGTGTCATCTTGTCTTGAAATGAAGGATGAAGATGGAT
TAGATTCTAAGCATAAGTGTAATAATCCGGGAGAAATAGATGTGCCATCTCATGAATTAAATTGTTCACT
TCTTTCAGAGACTTGTGTTACTATTGGAGAAAAGAAAAATGAAGCTTTGATGGAATGTAAAGCCAAGCCT
GTTGGTAGTCCATTGTTTAAGTTTTCAGATAAAGAAGAACATGAACAAAATGATTCCATTTCAGGTAAAA
CGGGTGAGACTGTTGTTGAAGAAATGATAGCAACAAGAAAAGTTGAACAAGATTCAAAGGAGACAGTAAA
ATTATCCCATGAAGATGACCATATTCTTGAGGACGCTGGATCTTCTGATATTTCTAGTGATGCTGCTTGT
ACAAATCCAAATAAGACAGAAAACAGCCTTGTAGGTTTGCCTAGTTGTGTAGATGAAGTGACTGAATGTA
ATTTGGAATTGAAGGATACCATGGGTATTGCTGATAAAACTGAGAACACCCTTGAAAGAAATAAAATTGA
ACCGTTGGGTTATTGTGAAGATGCGGAGTCTAATAGGCAGTTGGAGAGCACTGAGTTTAATAAATCAAAC
TTAGAGGTGGTTGATACTAGTACTTTTGGACCGGAAAGTAATATCTTGGAAAATGCTATTTGTGATGTGC
CTGACCAAAATTCAAAACAGTTGAATGCTATAGAAAGTACTAAAATAGAGTCCCATGAAACAGCAAACCT
TCAGGATGACAGAAACAGCCAGTCAAGTAGCGTTTCTTACTTAGAGTCAAAAAGTGTAAAATCCAAACAT
ACAAAACCTGTAATTCATTCTAAGCAAAACATGACCACAGATGCTCCGAAGAAAATTGTTGCAGCAAAGT
ATGAAGTAATACATAGCAAAACTAAAGTTAATGTCAAAAGTGTGAAACGAAATACTGATGTACCAGAATC
TCAGCAAAATTTTCATAGGCCAGTCAAAGTCAGAAAAAAACAAATTGATAAGGAGCCAAAGATTCAGAGT
TGCAATTCTGGGGTTAAATCTGTGAAAAACCAAGCTCATTCTGTACTGAAAAAAACATTACAGGATCAAA
CTTTAGTACAAATTTTCAAGCCCTTAACTCATTCTTTGAGTGATAAGTCACACGCTCATCCTGGTTGCTT
GAAAGAACCTCATCATCCTGCACAAACTGGACATGTATCACATTCTAGCCAGAAACAGTGTCATAAGCCT
CAGCAACAGGCCCCAGCAATGAAAACCAATAGTCACGTGAAGGAAGAGCTTGAACACCCAGGCGTTGAGC
ATTTTAAGGAAGAGGATAAACTGAAACTGAAAAAACCTGAGAAGAACCTACAACCCCGCCAAAGAAGAAG
CAGCAAAAGTTTTTCTTTAGATGAGCCACCATTGTTCATTCCAGATAACATAGCTACCATAAGAAGAGAA
GGCTCTGATCATAGCTCCTCATTTGAAAGCAAATATATGTGGACTCCCAGCAAGCAGTGTGGGTTTTGCA
AAAAACCACATGGCAACAGGTTTATGGTTGGCTGTGGGAGATGTGATGACTGGTTTCATGGTGATTGTGT
TGGGTTAAGTCTTTCTCAAGCACAGCAGATGGGCGAGGAAGACAAAGAATATGTCTGTGTAAAATGTTGT
GCTGAAGAAGACAAAAAGACTGAAATACTAGATCCAGATACTTTGGAAAACCAAGCTACAGTTGAATTCC
ATAGTGGAGATAAAACAATGGAGTGTGAAAAGCTTGGATTATCAAAACACACAACAAATGATAGAACCAA
ATATATAGATGATACAGTGAAGCACAAGGTCAAAATTTTAAAACGGGAGTCTGGTGAAGGCAGAAATTCA
TCAGACTGTAGAGATAATGAAATTAAAAAATGGCAGCTAGCTCCTCTTCGTAAGATGGGACAACCAGTTT
TACCTCGGAGATCCTCAGAAGAAAAAAGTGAAAAAATACCGAAAGAGTCTACAACTGTTACTTGCACAGG
AGAAAAAGCTTCAAAACCAGGTACTCATGAGAAGCAAGAGATGAAAAAGAAGAAAGTTGAAAAAGGAGTG
CTTAATGTACATCCTGCTGCTTCTGCTTCCAAGCCTTCTGCAGATCAGATCAGGCAAAGTGTCAGACATT
CTCTCAAAGACATTCTTATGAAGAGACTTACAGACTCAAATTTGAAGGTACCAGAGGAAAAGGCAGCAAA
AGTTGCCACAAAAATTGAGAAAGAGCTTTTCTCTTTTTTTCGGGACACAGATGCTAAATATAAGAACAAA
TATAGAAGTTTGATGTTTAATTTGAAAGATCCTAAAAACAATATATTATTTAAAAAAGTACTGAAAGGAG
AAGTAACTCCTGATCATCTTATCAGAATGAGTCCAGAAGAACTAGCTTCTAAAGAGTTAGCTGCTTGGAG
ACGAAGAGAAAACAGACATACCATAGAAATGATTGAGAAAGAGCAGAGAGAAGTGGAACGACGGCCAATC
ACCAAAATAACTCATAAAGGTGAAATAGAAATTGAGAGTGATGCCCCAATGAAAGAACAGGAAGCAGCCA
TGGAGATTCAGGAACCAGCCGCCAATAAGTCATTGGAGAAGCCAGAAGGATCTGAAAAACAAAAAGAGGA
GGTTGACTCTATGTCTAAAGATACCACTAGTCAACACAGACAGCATCTTTTTGATCTCAACTGCAAAATC
TGCATAGGTCGAATGGCACCACCTGTAGATGATCTTTCTCCAAAAAAAGTAAAAGTTGTTGTAGGAGTAG
CTCGCAAACATTCAGACAATGAAGCAGAAAGTATAGCAGATGCATTATCTTCAACCTCAAATATTTTGGC
TTCTGAATTCTTTGAGGAGGAGAAACAGGAGTCTCCAAAGTCAACGTTCTCTCCTGCTCCACGTCCAGAG
ATGCCTGGAACTGTTGAAGTTGAGTCTACCTTTCTGGCTCGATTGAACTTCATCTGGAAAGGTTTTATCA
ACATGCCTTCTGTGGCAAAATTTGTTACCAAAGCCTATCCAGTATCTGGCTCCCCAGAATACCTGACAGA
GGACCTACCAGATAGTATTCAAGTAGGTGGCAGGATATCACCTCAGACAGTTTGGGATTATGTGGAAAAA
ATAAAAGCATCAGGAACCAAGGAAATTTGTGTGGTTCGCTTCACACCAGTAACTGAAGAAGATCAAATTT
CTTATACTTTGCTCTTTGCATACTTCAGTAGCAGAAAGCGCTATGGAGTAGCTGCTAACAACATGAAGCA
GGTTAAAGATATGTACCTTATTCCTTTGGGTGCCACAGATAAAATTCCACACCCTCTTGTGCCTTTTGAT
GGACCTGGGCTTGAACTGCATAGACCTAATCTATTGTTGGGCTTAATTATTCGTCAGAAACTGAAGCGAC
AGCACAGTGCCTGTGCTAGTACTAGTCATATAGCTGAGACTCCTGAAAGTGCACCACCAATAGCATTGCC
ACCTGATAAAAAAAGTAAAATAGAAGTTTCTACAGAAGAAGCACCAGAGGAAGAAAATGACTTTTTTAAT
TCTTTTACAACTGTATTACACAAGCAGAGAAATAAACCTCAGCAGAATCTTCAGGAAGACCTTCCAACAG
CAGTTGAACCTTTAATGGAAGTCACCAAACAGGAGCCACCAAAACCTTTAAGATTTCTTCCTGGCGTGTT
GATTGGCTGGGAGAATCAACCTACTACTCTGGAATTAGCAAATAAACCTCTTCCTGTGGATGATATACTT
CAAAGCCTTTTGGGCACCACTGGTCAAGTATATGACCAGGCCCAGTCAGTGATGGAACAAAACACTGTTA
AAGAAATTCCATTTTTAAATGAGCAGACCAACTCAAAAATAGAGAAAACAGATAATGTGGAAGTAACTGA
TGGTGAAAACAAGGAGATAAAAGTTAAAGTAGATAATATTTCAGAATCTACAGATAAGTCAGCAGAAATA
GAAACATCAGTAGTAGGGTCCTCTTCCATTTCTGCAGGGTCTTTGACGAGTCTTAGTCTCAGAGGTAAGC
CACCAGATGTTTCTACAGAAGCATTTTTAACAAATTTATCAATTCAGTCAAAACAAGAGGAAACTGTGGA
GAGTAAAGAGAAAACATTAAAAAGACAGCTTCAGGAAGATCAAGAGAATAATTTGCAAGATAACCAGACT
TCAAATAGTTCTCCATGCAGATCTAATGTAGGAAAAGGAAACATAGATGGTAATGTGAGCTGTAGTGAAA
ACCTTGTTGCTAATACAGCGAGGTCTCCACAGTTTATCAACCTGAAAAGGGATCCTAGGCAAGCAGCAGG
ACGAAGTCAGCCTGTAACTACTTCAGAAAGCAAAGATGGAGATAGTTGCCGGAATGGAGAAAAACACATG
CTGCCTGGCCTGTCACACAACAAGGAGCACTTAACAGAACAAATCAATGTAGAGGAAAAGTTGTGTTCTG
CAGAGAAAAACTCGTGTGTTCAGCAGAGTGACAATTTAAAAGTTGCACAAAACTCACCATCAGTAGAAAA
CATACAGACTTCTCAAGCAGAACAAGCAAAACCCTTACAGGAGGATATTTTAATGCAAAATATTGAAACT
GTGCACCCATTTCGAAGAGGATCAGCAGTAGCGACATCTCATTTTGAAGTTGGAAACACATGTCCATCAG
AATTTCCTTCTAAAAGCATCACCTTTACTTCCAGAAGCACCAGCCCCAGAACAAGTACAAACTTTTCACC
CATGAGGCCACAGCAGCCCAACCTTCAGCATCTCAAGTCTAGCCCACCTGGATTTCCATTTCCAGGGCCT
CCTAATTTTCCCCCACAAAGCATGTTTGGATTTCCACCACATTTGCCACCTCCATTACTTCCCCCTCCAG
GCTTTGGCTTTGCTCAAAATCCCATGGTTCCCTGGCCACCTGTTGTTCATCTCCCAGGTCAGCCACAGCG
TATGATGGGTCCTCTCTCACAAGCATCAAGGTATATAGGCCCGCAGAATTTTTACCAGGTTAAAGACATT
CGGAGGCCAGAAAGGCGCCATAGTGACCCTTGGGGTAGGCAAGACCAACAGCAACTGGATAGGCCATTTA
ATAGGGGTAAAGGGGACCGCCAGAGATTTTATAGTGATTCACACCATTTGAAAAGAGAGCGACATGAAAA
GGAATGGGAGCAAGAATCTGAAAGGCATAGACGCAGAGACAGAAGCCAAGACAAGGACAGAGACAGAAAA
AGCAGGGAGGAAGGGCACAAAGATAAAGAGAGGGCACGGTTATCACATGGTGATCGAGGAACAGATGGAA
AAGCAAGCAGAGATAGTAGGAATGTAGACAAGAAGCCAGATAAACCTAAAAGTGAAGACTATGAGAAGGA
CAAAGAACGAGAGAAAAGTAAACACAGAGAAGGAGAAAAGGACAGGGATAGGTACCACAAAGATAGGGAC
CACACTGACAGAACTAAAAGCAAAAGGTAA

Translation (2039 aa):
MDIVDTFNHLIPTEHLDDALFLGSNLENEVCEDFSASQNVLEDSLKNMLSDKDPMLGSASNQFCLPVLDS
NDPNFQMPCSTVVGLDDIMDEGVVKESGNDTIDEEELILPNRNLRDKVEENSVRSPRKSPRLMAQEQVRS
LRQSTIAKRSNAAPLSNTKKASGKTVSTAKAGVKQPERSQVKEEVCMSLKPEYHKENRRCSRNSGQIEVV
PEVSVSSSHSSVSSCLEMKDEDGLDSKHKCNNPGEIDVPSHELNCSLLSETCVTIGEKKNEALMECKAKP
VGSPLFKFSDKEEHEQNDSISGKTGETVVEEMIATRKVEQDSKETVKLSHEDDHILEDAGSSDISSDAAC
TNPNKTENSLVGLPSCVDEVTECNLELKDTMGIADKTENTLERNKIEPLGYCEDAESNRQLESTEFNKSN
LEVVDTSTFGPESNILENAICDVPDQNSKQLNAIESTKIESHETANLQDDRNSQSSSVSYLESKSVKSKH
TKPVIHSKQNMTTDAPKKIVAAKYEVIHSKTKVNVKSVKRNTDVPESQQNFHRPVKVRKKQIDKEPKIQS
CNSGVKSVKNQAHSVLKKTLQDQTLVQIFKPLTHSLSDKSHAHPGCLKEPHHPAQTGHVSHSSQKQCHKP
QQQAPAMKTNSHVKEELEHPGVEHFKEEDKLKLKKPEKNLQPRQRRSSKSFSLDEPPLFIPDNIATIRRE
GSDHSSSFESKYMWTPSKQCGFCKKPHGNRFMVGCGRCDDWFHGDCVGLSLSQAQQMGEEDKEYVCVKCC
AEEDKKTEILDPDTLENQATVEFHSGDKTMECEKLGLSKHTTNDRTKYIDDTVKHKVKILKRESGEGRNS
SDCRDNEIKKWQLAPLRKMGQPVLPRRSSEEKSEKIPKESTTVTCTGEKASKPGTHEKQEMKKKKVEKGV
LNVHPAASASKPSADQIRQSVRHSLKDILMKRLTDSNLKVPEEKAAKVATKIEKELFSFFRDTDAKYKNK
YRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQREVERRPI
TKITHKGEIEIESDAPMKEQEAAMEIQEPAANKSLEKPEGSEKQKEEVDSMSKDTTSQHRQHLFDLNCKI
CIGRMAPPVDDLSPKKVKVVVGVARKHSDNEAESIADALSSTSNILASEFFEEEKQESPKSTFSPAPRPE
MPGTVEVESTFLARLNFIWKGFINMPSVAKFVTKAYPVSGSPEYLTEDLPDSIQVGGRISPQTVWDYVEK
IKASGTKEICVVRFTPVTEEDQISYTLLFAYFSSRKRYGVAANNMKQVKDMYLIPLGATDKIPHPLVPFD
GPGLELHRPNLLLGLIIRQKLKRQHSACASTSHIAETPESAPPIALPPDKKSKIEVSTEEAPEEENDFFN
SFTTVLHKQRNKPQQNLQEDLPTAVEPLMEVTKQEPPKPLRFLPGVLIGWENQPTTLELANKPLPVDDIL
QSLLGTTGQVYDQAQSVMEQNTVKEIPFLNEQTNSKIEKTDNVEVTDGENKEIKVKVDNISESTDKSAEI
ETSVVGSSSISAGSLTSLSLRGKPPDVSTEAFLTNLSIQSKQEETVESKEKTLKRQLQEDQENNLQDNQT
SNSSPCRSNVGKGNIDGNVSCSENLVANTARSPQFINLKRDPRQAAGRSQPVTTSESKDGDSCRNGEKHM
LPGLSHNKEHLTEQINVEEKLCSAEKNSCVQQSDNLKVAQNSPSVENIQTSQAEQAKPLQEDILMQNIET
VHPFRRGSAVATSHFEVGNTCPSEFPSKSITFTSRSTSPRTSTNFSPMRPQQPNLQHLKSSPPGFPFPGP
PNFPPQSMFGFPPHLPPPLLPPPGFGFAQNPMVPWPPVVHLPGQPQRMMGPLSQASRYIGPQNFYQVKDI
RRPERRHSDPWGRQDQQQLDRPFNRGKGDRQRFYSDSHHLKRERHEKEWEQESERHRRRDRSQDKDRDRK
SREEGHKDKERARLSHGDRGTDGKASRDSRNVDKKPDKPKSEDYEKDKEREKSKHREGEKDRDRYHKDRD
HTDRTKSKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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