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Report for CCDS49934.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49934.1 Public Mus musculus 17 Tulp4 23 108 98 CCDS HistoryNCBI Gene:68842Re-query CCDS DB by CCDS ID:49934.1Re-query CCDS DB by GeneID:68842See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49934.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000149756.7 ENSMUSP00000123218.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000149756.7Link to Ensembl Protein Viewer:ENSMUSP00000123218.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000149756Re-query CCDS DB by Protein ID:ENSMUSP00000123218
Original member Current member NCBI NM_001103181.1 NP_001096651.1 Accepted alive Link to Nucleotide Sequence:NM_001103181.1Link to Protein Sequence:NP_001096651.1Re-query CCDS DB by Nucleotide ID:NM_001103181Re-query CCDS DB by Protein ID:NP_001096651Link to BLAST:NP_001096651.1

Chromosomal Locations for CCDS 49934.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 6198708 6198852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6201700 6201834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6206891 6207057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6213384 6213608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6214635 6214869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6219368 6219512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6222304 6222448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6224152 6224245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6229335 6229478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6231712 6234224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 6236226 6236342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4065 nt):
ATGGACTGCCACGGCAGAATGCTAGCCCATGTCCTCCTGCATGAATCTGATGGCATCCTCAGCATGTCCT
GGAATTACCCCATCTTCCTGGTGGAGGACAGCAGTGAGAGTGACACTGACTCGGATGATTATTCTCCTCC
CCAAGATGGGCCCGCGGCTTACCCCATCCCTGTGCAGAACACCAAGCCGCTGCTCACCGTCAGCTTCACC
TCCGGAGACATCAGCTTAATGAACAACTATGACGACTTGTCTCCCACTGTCATCCGTTCAGGGCTGAAAG
AGGTGGTGGCCCAGTGGTGTACGCAGGGAGACTTACTGGCAGTTGCTGGGATGGAGCAGCAGGCACAGCT
CAGCGAACTGCCCAATGGTCCTCTTCTGAAGAGTGCCATGGTCAAGTTCTACAATGTTAGAGGAGAGCAC
ATTTTCACTCTGGATACACTTGTACAGCGCCCTATCATCTCTATCTGTTGGGGCCATCGGGACTCTAGGC
TGCTTATGGCTTCAGGACCAGCCCTGTATGTGGTTCGTGTGGAACACCGAGTGTCCAGTCTCCAGCTGTT
GTGCCAACAGGCCATCGCCAGCACTCTTCGAGAAGACAAGGATGTTAACAAGCTGACCTTGCCCCCTCGT
CTCTGTTCCTACCTCTCCACTGCCTTCATTCCCACTATTAAGCCCCCGATTCCAGACCCCAACAACATGC
GAGACTTTGTCAGCTACCCCTCAGCGGGCAATGAACGGCTGCACTGCACCATGAAGCGCACAGAGGATGA
CCCAGAGGTCGGCGGGCCCTGCTACACACTCTACTTGGAGTACCTGGGAGGGCTCGTGCCCATTCTCAAG
GGGAGGCGCATCAGCAAACTGCGGCCAGAGTTTGTCATTATGGACCCTCGGACAGACAGCAAATCAGATG
AGATCTATGGGAACAGCTTAATTTCTACTGTGATTGACAGCTGCAACTGCTCAGACTCCAGTGATATCGA
ACTGAGTGATGATTGGGCTGCCAAGAAGTCTCCCAAAATCTCCAGATCTAGCAAATCGCCCAAACTCCCA
AGGATCAGCATTGAGGCCCGAAAGTCACCCAAGCTTCCACGGGCTGCTCAAGAGATTTCTCGGTCTCCCC
GATTGCCCATGCGCAAGCCCTCCATGGGCTCGCCCAGCCTGACACGGAGAGAGTTTCCTTTTGAAGACAT
CACTCAGCACAACTATCTTGCTCAGGTCACATCCAATATCTGGGGAACCAAGTTTAAGATTGTGGGCTTG
GCTGCATTCCTACCAACCAACCTCGGTGCAGTAATCTATAAAACCAGCCTGCTGCATCTCCAGCCTCGGC
AGATGACCATTTATCTCCCGGAAGTTAGGAAGATTTCCATGGACTATATTAACCTGCCTGTCTTCAACCC
AAACGTTTTCAGTGAAGATGAGGATGACTTACCAGTTACAGGAGCATCAGGTGTCCCTGAAAACAACCCG
CCCTGTACAGTGAACATCCCTATTGCACCAATCCACAGCTCTGCTCAAGCTCTGTCTCCCACCCAGAGCA
TAGGGCTGGTGCAGTCCCTGCTGGCCAATCAAAATGTGCAGTTGGATGTCTTAACCAATCAGACAACAGC
TGTAGGGTCAGCAGAGCATGCAGGTGATGCTGCTACCCAGTACCCAGTCTCCAGTCGGTACTCCAATCCT
GGACAGGTGATTTTTGGAGGTGTAGAAATGGGCCGCATCATTCAGAATCCTCCTCAATTGCCTTTGCCAC
CACCGCCACCACCACCACCACAGGCGCCTATGCAGCTGTCTGCGGTGGACCATGGAGATCGGGACCATGA
GCACCTGCAGAAGTCAGCCAAGGCCCTGCGCCCAGTGCCTCAGCTGGCTGCCGAGGGGGATGCGGTAGTT
TTCAGTGCCCCGCAGGAGGTCCAGGTGGCGAAGATGAATCCCCCACCCCCGTATCCAGGAACTATCCCTG
CTGCCCCCACCACGGCTGCACCCCCACCCCCTCTGCCACCACCACAGCCCCCAGTGGATGTGTGTTTGAA
GAAGGGTGACTTCTCACTGTACCCTACAGCAGCACATTACCAGCCTCCACTAGGCTATGAGAGGATTACC
ACCTTTGACAGCAGTGGCAATGTGGAAGAGGTGTGCCGGCCTCGGACTCGGATGCTCTGTTCCCAGAACA
CCTACACTCTCCCTGGCCCAGGCAGTTCTGCCACCTTGAGACTCACAGCCACTGAGAAGAAGGTCCCCCA
ACCCTGCACCAGTGCGACTCTGAACCGACTAACTGTCCCTCGATACTCCATCCCCACAGGGGACCCACCT
CCTTACCCTGAAATTGCTAGCCAGCTGGCCCAGGGGCGGAGTGCCGCTCAAAGGCTGGACAACAGTCTCA
TCCATGCCACCCTACGAAGGAACAACCGAGAGGTGGCACTTAAGATGGCCCAGCTGGCAGACAGCTCCCG
TGCCCCACTGCAGCCCCTAGCCAAGCCTAAGGGGGGTGCTGCTGGGGCAGTGGCACAGCTCCCAGCAAGA
CCTCCACCTGCCCTATACACCTGCAGCCAGTGCAGTGGAGCAGGGCCCAGCTCCCAGTCAGGTGCAGCCC
TGGCCCATGCTATCAGCACCTCCCCACTGGCCTCCCAGTCCTCCTATAATCTTCTAAGCCCTCCTGACAC
CTCCCGTGATCGTACTGACTATGTCAACTCAGCCTTCACCGAGGATGAGGCCCTGTCTCAGCACTGTCAG
CTCGAGAAGCCTCTGAGGCACCCCCCACTTCCTGAAGCTGCTGTCACCATGAAGCGACCTCCCCCTTACC
AGTGGGACCCCATGCTGGGTGAGGACGTTTGGGTTCCCCAGGAAAGGACAGCACAACCTACAGTGCCCAA
CCCCTTAAAACTGTCCCCCCTCATGCTAGGGCAAGGCCAGCACCTGGATGTGGCTCGAGTGCCCTTTGTG
CCTCCCAAGTCTCCGTCCAGCCCTACTGCCACCTTCCCGACAGGCTATGGGATGGGAATGCCATATCCAG
GCAGCTATAACAACCCCTCTTTGCCTGGAGTACAAGCTCCATGCTCCCCTAAGGATGCCCTGTCCCAGGC
ACAGTTTGCACAACAGGAGTCTGCTGTGGTACTTCAGCCAGCATACCCACCCAGCCTTTCCTACTGCACC
TTGCCCCCCACATACCCAGGAAGCAGCACCTGCTCCAGTGTACAGCTGCCGCCCATCGCCTTGCACCCTT
GGAACTCCTACAGCACCTGCCCGCCCATGCAGAACACCCAGGGCACTCTTCCCCCCAAGCCCCACTTAGT
GGTGGAGAAGCCTCTTGTGTCCCCTCCACCTGCCGAGCTCCAAAGCCACATGGGCACAGAGGTGATGGTA
GAGACTGCAGACAATTTCCAAGAAGTCCTCTCTCTGACAGAAAGCCCTGTACCGCAGAGAACGGAAAAAT
TCGGAAAGAAGAACCGGAAGCGCCTGGATAGCCGAGCAGAGGAAGGAAGTGTTCAGGCCATCACTGAGGG
CAAAGTGAAAAAGGATGCTAGGACTTTGAGTGACTTTAATTCTCTCATCTCCAGCCCCCGCCTAGGGAGA
GAGAAGAAGAAAGTGAAAAGTCAGAAAGACCAACTGAAGTCAAAGAAGTTGAACAAGACAAACGAGTTCC
AGGACAGCTCAGAGAGTGAGCCCGAGCTGTTCATCAGCGGGGATGAGCTGATGAACCAAAGCCAGGGCAG
CAAGAAGGGGTGGAAAAGCAAGAGGAGCCTGCGGACCGCCAGTGAGCTGGAGGAATTCAAGTGCCGCAAA
GCCAGTGAGAAGGAAGATGGGCGGCTGGGCAGCCAGGGCTTCGTGTACGTGATGGCCAACAAGCAGCCAC
TGTGGAACGAAGCCACACAGGTGTACCAGCTGGACTTCGGAGGAAGGGTGACCCAGGAGTCTGCCAAGAA
TTTCCAGATTGAGTTGGAAGGACGACAGGTGATGCAGTTTGGACGGATTGATGGCAACGCATACATCCTA
GACTTCCAGTACCCCTTCTCAGCTGTTCAGGCTTTTGCTGTTGCCCTGGCCAATGTGACTCAGCGCCTAA
AATGA

Translation (1354 aa):
MDCHGRMLAHVLLHESDGILSMSWNYPIFLVEDSSESDTDSDDYSPPQDGPAAYPIPVQNTKPLLTVSFT
SGDISLMNNYDDLSPTVIRSGLKEVVAQWCTQGDLLAVAGMEQQAQLSELPNGPLLKSAMVKFYNVRGEH
IFTLDTLVQRPIISICWGHRDSRLLMASGPALYVVRVEHRVSSLQLLCQQAIASTLREDKDVNKLTLPPR
LCSYLSTAFIPTIKPPIPDPNNMRDFVSYPSAGNERLHCTMKRTEDDPEVGGPCYTLYLEYLGGLVPILK
GRRISKLRPEFVIMDPRTDSKSDEIYGNSLISTVIDSCNCSDSSDIELSDDWAAKKSPKISRSSKSPKLP
RISIEARKSPKLPRAAQEISRSPRLPMRKPSMGSPSLTRREFPFEDITQHNYLAQVTSNIWGTKFKIVGL
AAFLPTNLGAVIYKTSLLHLQPRQMTIYLPEVRKISMDYINLPVFNPNVFSEDEDDLPVTGASGVPENNP
PCTVNIPIAPIHSSAQALSPTQSIGLVQSLLANQNVQLDVLTNQTTAVGSAEHAGDAATQYPVSSRYSNP
GQVIFGGVEMGRIIQNPPQLPLPPPPPPPPQAPMQLSAVDHGDRDHEHLQKSAKALRPVPQLAAEGDAVV
FSAPQEVQVAKMNPPPPYPGTIPAAPTTAAPPPPLPPPQPPVDVCLKKGDFSLYPTAAHYQPPLGYERIT
TFDSSGNVEEVCRPRTRMLCSQNTYTLPGPGSSATLRLTATEKKVPQPCTSATLNRLTVPRYSIPTGDPP
PYPEIASQLAQGRSAAQRLDNSLIHATLRRNNREVALKMAQLADSSRAPLQPLAKPKGGAAGAVAQLPAR
PPPALYTCSQCSGAGPSSQSGAALAHAISTSPLASQSSYNLLSPPDTSRDRTDYVNSAFTEDEALSQHCQ
LEKPLRHPPLPEAAVTMKRPPPYQWDPMLGEDVWVPQERTAQPTVPNPLKLSPLMLGQGQHLDVARVPFV
PPKSPSSPTATFPTGYGMGMPYPGSYNNPSLPGVQAPCSPKDALSQAQFAQQESAVVLQPAYPPSLSYCT
LPPTYPGSSTCSSVQLPPIALHPWNSYSTCPPMQNTQGTLPPKPHLVVEKPLVSPPPAELQSHMGTEVMV
ETADNFQEVLSLTESPVPQRTEKFGKKNRKRLDSRAEEGSVQAITEGKVKKDARTLSDFNSLISSPRLGR
EKKKVKSQKDQLKSKKLNKTNEFQDSSESEPELFISGDELMNQSQGSKKGWKSKRSLRTASELEEFKCRK
ASEKEDGRLGSQGFVYVMANKQPLWNEATQVYQLDFGGRVTQESAKNFQIELEGRQVMQFGRIDGNAYIL
DFQYPFSAVQAFAVALANVTQRLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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