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Report for CCDS50113.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50113.1 Public Mus musculus 17 Adgrf4 23 108 98 CCDS HistoryNCBI Gene:78249Re-query CCDS DB by CCDS ID:50113.1Re-query CCDS DB by GeneID:78249See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50113.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024711.10 ENSMUSP00000024711.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024711.10Link to Ensembl Protein Viewer:ENSMUSP00000024711.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000024711Re-query CCDS DB by Protein ID:ENSMUSP00000024711
Original member Current member EBI ENSMUST00000167993.7 ENSMUSP00000132890.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167993.7Link to Ensembl Protein Viewer:ENSMUSP00000132890.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167993Re-query CCDS DB by Protein ID:ENSMUSP00000132890
Original member Current member EBI ENSMUST00000170723.7 ENSMUSP00000133261.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170723.7Link to Ensembl Protein Viewer:ENSMUSP00000133261.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170723Re-query CCDS DB by Protein ID:ENSMUSP00000133261
Original member Current member NCBI NM_001289499.1 NP_001276428.1 Accepted alive Link to Nucleotide Sequence:NM_001289499.1Link to Protein Sequence:NP_001276428.1Re-query CCDS DB by Nucleotide ID:NM_001289499Re-query CCDS DB by Protein ID:NP_001276428Link to BLAST:NP_001276428.1
Original member Current member NCBI NM_001289500.1 NP_001276429.1 Accepted alive Link to Nucleotide Sequence:NM_001289500.1Link to Protein Sequence:NP_001276429.1Re-query CCDS DB by Nucleotide ID:NM_001289500Re-query CCDS DB by Protein ID:NP_001276429Link to BLAST:NP_001276429.1
Original member Current member NCBI NM_001289501.1 NP_001276430.1 Accepted alive Link to Nucleotide Sequence:NM_001289501.1Link to Protein Sequence:NP_001276430.1Re-query CCDS DB by Nucleotide ID:NM_001289501Re-query CCDS DB by Protein ID:NP_001276430Link to BLAST:NP_001276430.1
Original member Current member NCBI NM_030067.2 NP_084343.1 Accepted alive Link to Nucleotide Sequence:NM_030067.2Link to Protein Sequence:NP_084343.1Re-query CCDS DB by Nucleotide ID:NM_030067Re-query CCDS DB by Protein ID:NP_084343Link to BLAST:NP_084343.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276428.1 698 Q9D2L6 698 99.8567% 0 1
NP_001276429.1 698 Q9D2L6 698 99.8567% 0 1
NP_001276430.1 698 Q9D2L6 698 99.8567% 0 1
NP_084343.1 698 Q9D2L6 698 99.8567% 0 1

Chromosomal Locations for CCDS 50113.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 42662359 42662406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42663379 42663438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42663879 42663920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42666504 42667886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42669629 42669898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42672496 42672647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42675725 42675779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42676655 42676741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2097 nt):
ATGAAGCCCTGGATTGCCATGGTTTGCTGTTTAGTATTTTTTCTGACAACAGAATGTTCTCATTCCAAAC
CCAAGACTCACAGAAAAGATGAAGATAAATTTCAAATATCTCTACAGAAGCATGAGTTTAGACCAAGACA
GGGTAAATGTGATGGACTGTGCAGCTCTTCTTCCAGCTGTAACCAGAGCTGTCCTTGGAACTTCCGTGGA
GAAATCGTATTCACATGTAATCAAAACAAATGGCAAAAAACAATCGAAACATGCACAAGTCTCTCTGTGG
ACACCTTGTTTCAGCGCATACATCCTGCAGCTAGCCTATCCTTGGCGTCTTCTTCTGTTTTTCCCATGAG
CTTAATTGGCAATGCAGCACCAGTCCATATTGGAAATGTATTTCAAGGAATCCAAAAGTACTGCCCCGAG
GACTACGTTTGCATTGTTGATGCTGTGAAATCCTCTGCAGTTACATCTGGAAATATTGCATTCATAGTAG
AGTTATTAAAAAATATCTCTTCAAACCTGCAAACTTCTGGAATACATGATAATGTGAATTGGAAGAAAAT
GAAGAACTATGGCAAAGTGGCCAACCATATCCTTGGCCCCACTGCCATTTCAAATTGGGCTTTCATTGCC
AACAAAAATGCCAGCTCAGATCTGTTGGAGTCGGTGAACTCTTTTGCCAAGAAACTCCAAATCCAAGGTA
AATCTGAGAGCATCGTAGATGAACTCTTTATTCAGACGAAAGGCTCTCGTATCTCTCACAGTTCCTCAGA
GCACAGCCTCAGCCTCTCTGTACCCAGGTACAATGCTACAGAAGATGTCTTAGTGGTGATCGAAATTCCT
AGGCAAGCATTACAGGAGCTGTCGTTCAATGCCTCCCAAGCCATTGTTGTCGCTTTTCCAACCTTGGGGG
CCATTCTAAAAGAAGTCCATCGGCCAAATACAAATCTCCAAAAGCCTATAGATGACCTCATCCTATCACT
GGTTTTGCCAGAAGGTCTGAACGAAATCATACTCACCTTTGATAAAATCAATAAATCCCAGAGCACCAGC
AGCCAGTGTGTCAGCTGGGATCCTGCAACAGGGCAGTGGGATGAGAGCCCATGTACAGTGATGTCAGACA
TCAATAGCACAGTGAAATGCCGGTGCAGGCACACCAAAGCTGTGACGTCCTTCTCCATCCTCATGTCTTC
TAAGCCTGTAAAGAATACGATTCTGAACCATATCACCTTCATTGGACTCAGCATCTCCATCTTTAGCTTG
GTGCTCTGCCTGGTCATTGAGGCCATCGTCTGGTCCCGGGTGGTTGTTACAGAGATATCCTACATGCGCC
ACGTGTGCATCGTGAACATTGCAGTGTCCCTCCTGACTGCCAATGTGTGGTTCATCATTGGCTCCAACTT
CAGTGCCAACGTTCAGGAGGATCACAAGTGGTGTGTGGCTGTGACATTTCTCTGCCACTTCTTCTTCCTC
TCCCTGTTCTTCTGGATGCTCTTCAAAGCGCTGCTCATAGTCTATGGAATACTGGTTGTCTTCCGCAGGA
TGATGAAGTCTCGGATGATGGCCATTGGCTTTGCCATTGGCTATGGGTGTCCCCTTGTGATCGCGGTCAT
CACTGTTACTGTCACAGAGCCTGGGGAAGGCTACACCAGAAAAGATGCCTGTTGGCTTAATTGGAACCAA
ACCAAAGCCCTTTTTGCTTTTGCTATCCCAGCCTTGGCCATTGTGGCTGTGAATCTCCTTGTGGTTCTGG
CAGTTGCTATCAACACACAGAGGCCCTTGATTGGCAGTTCAAAATCTCAGGATATGGCCATTGTTTTCAG
GATCAGCAAAAATGTTGCCATCCTCACCCCACTTCTGGGACTGACCTGGGGTTTTGGTCTAACAACCCTG
CTAGAAGGCGTACACCTGGTATTCCATATAATCTTCGCCTTGCTCAATGCTTTCCAGGGCTTTTTCATCT
TGCTGTTTGGTACCATTATGGATCACAAGATAAGAGATGCTCTGAGGATGAGGGTATCTTCATTGAAGGG
GAAATCAAGGGCAGCAGAGAAGGTGTCATTAAGTCCAGCCAATGGATCCAGAATACTGAATCGCTGA

Translation (698 aa):
MKPWIAMVCCLVFFLTTECSHSKPKTHRKDEDKFQISLQKHEFRPRQGKCDGLCSSSSSCNQSCPWNFRG
EIVFTCNQNKWQKTIETCTSLSVDTLFQRIHPAASLSLASSSVFPMSLIGNAAPVHIGNVFQGIQKYCPE
DYVCIVDAVKSSAVTSGNIAFIVELLKNISSNLQTSGIHDNVNWKKMKNYGKVANHILGPTAISNWAFIA
NKNASSDLLESVNSFAKKLQIQGKSESIVDELFIQTKGSRISHSSSEHSLSLSVPRYNATEDVLVVIEIP
RQALQELSFNASQAIVVAFPTLGAILKEVHRPNTNLQKPIDDLILSLVLPEGLNEIILTFDKINKSQSTS
SQCVSWDPATGQWDESPCTVMSDINSTVKCRCRHTKAVTSFSILMSSKPVKNTILNHITFIGLSISIFSL
VLCLVIEAIVWSRVVVTEISYMRHVCIVNIAVSLLTANVWFIIGSNFSANVQEDHKWCVAVTFLCHFFFL
SLFFWMLFKALLIVYGILVVFRRMMKSRMMAIGFAIGYGCPLVIAVITVTVTEPGEGYTRKDACWLNWNQ
TKALFAFAIPALAIVAVNLLVVLAVAINTQRPLIGSSKSQDMAIVFRISKNVAILTPLLGLTWGFGLTTL
LEGVHLVFHIIFALLNAFQGFFILLFGTIMDHKIRDALRMRVSSLKGKSRAAEKVSLSPANGSRILNR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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