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Report for CCDS50217.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50217.1 Public Mus musculus 18 Mpp7 23 108 98 CCDS HistoryNCBI Gene:75739Re-query CCDS DB by CCDS ID:50217.1Re-query CCDS DB by GeneID:75739See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50217.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115869.3 ENSMUSP00000111535.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115869.3Link to Ensembl Protein Viewer:ENSMUSP00000111535.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115869Re-query CCDS DB by Protein ID:ENSMUSP00000111535
Original member Current member NCBI NM_001081287.2 NP_001074756.2 Accepted alive Link to Nucleotide Sequence:NM_001081287.2Link to Protein Sequence:NP_001074756.2Re-query CCDS DB by Nucleotide ID:NM_001081287Re-query CCDS DB by Protein ID:NP_001074756Link to BLAST:NP_001074756.2
Original member Current member NCBI NM_001360860.1 NP_001347789.1 Accepted alive Link to Nucleotide Sequence:NM_001360860.1Link to Protein Sequence:NP_001347789.1Re-query CCDS DB by Nucleotide ID:NM_001360860Re-query CCDS DB by Protein ID:NP_001347789Link to BLAST:NP_001347789.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074756.2 576 Q8BVD5-1 576 99.8264% 0 1
NP_001347789.1 576 Q8BVD5-1 576 99.8264% 0 1

Chromosomal Locations for CCDS 50217.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 7350965 7351144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7353154 7353297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7355018 7355126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7356142 7356235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7379989 7380069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7403186 7403356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7439569 7439633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7440083 7440279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7440432 7440506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7441553 7441638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7442793 7442874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7443974 7444105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7458932 7459012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7461638 7461715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7512944 7513062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 7561726 7561762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1731 nt):
ATGCCAGCGCTGGCCACAGGATCGGCTTGCGACATGGGTCTGTATGAGCTGTTGGCTGCTCTGCCTGCCC
AGCTGCAGCCACATGTGGATAGCCAGGAGGACCTGACCTTCCTCTGGGACGTGTTTGGTGAAAAGAGCCT
GCATTCACTGGTCAAGATTCATGAAAAACTTCACTGCTATGAGAAGCAGAATCCGTTGCCCATTCTCCAT
GGTGCAGCAGCGTTGGCTGATGATCTGACTGAAGAGCTACAGAACAAGCTACCAAACAGTGAGATCAGAG
AGCTGTTGAAACTGCTGTCAAAACCCAATGTCAAGGCTTTGCTGTCAGTACATGATACTGTGGCTCAAAA
GAGTTATGATCCTGTATTGCCTCCCGTGCCTGACGATATTGATGATGAGGAAGACTCTGTGAAAATAATC
CGCCTGGTCAAAAATAGCGAGCCCCTGGGTGCTACCATTAAAAAAGATGAGCAGACCGGAGCAATCACTG
TGGCCCGAATCATGCGGGGAGGAGCTGCAGATAGAAGTGGTCTTATTCACGTGGGTGATGAGCTGAGGGA
AGTGAATGGAATCCCAGTGGAAGATAAGAGGCCTGAGGAAATAATAAAGATTTTGAGTCAGTCCAAGGGA
GCAATTACATTTAAGATAATACCCAGCACCAAAGAGGAGACACCTTCGAAAGAAGGCAAGATATTTATCA
AAGCCCTCTTTGACTACGATCCTAAGGAAGACAAGGCAATCCCGTGTAAAGAGGCAGGGCTGTCTTTCAG
GAAGGGGGACATTCTTCAGATTATGAGCCAAGATGATGTGACATGGTGGCAGGCTAAGCATGAAGGAGAT
GCCAACCCCAGAGCGGGCCTGATTCCCTCCAAGCACTTCCAGGAACGGAGACTGGCTCTGAGACGACCAG
AAATAGTAGTTCAGCCTCTGAAACTTTCCAACACGAAATCATCTGGTTTTAGAAGAAGTTTCCGTCTTAG
CAGAAAAAATAAGAAAATAAATAAGTCCATGTATGAATGCAAAAAGAGTGAGCAGTATGACACGGCAGAT
GTGCCCACATATGAGGAGGTGACACCCTACCGGCGGCAGATCCATGACAAATACAGACTCATTGTCCTGG
TTGGTCCTGTCGGAGTCGGGCTAAATGAGCTGAAGCGAAAGCTATTGATGAGTGATGCACAGCACTATGG
TGTGATAGTGCCCCACACCACTAGAGCAAGAAGAAGCCAAGAGAGTGATGGTGTGGAATATATTTTTATT
TCCAAACATTTGTTTGAGACAGATGTACAAAATAACAAGTTCATTGAGTATGGTGAATATAAAAACAACT
ATTATGGTACAAGTATAGACTCGGTTCGCTCTGTCCTAGCTAAGAACAAGGTTTGTCTGTTGGATGTCCA
GCCTCATACAGTGAAGCATTTAAGGACACTGGAGTTCAAACCCTATGTGATATTTATAAAACCTCCATCC
ATAGAGCGTTTGAGAGAGACAAGAAAAAATGCAAAGATTATTTCAAGCAGAGATGACCAAGGGACTGCAA
AGCCCTTCACGGAAGAAGACTTTCAGGAAATGATTAAATCAGCACAGATAATGGAAAGTCAATATGGCCA
TCTTTTTGACAAAATCATAATCAATGATGATCTTACTGTGGCATTTAATGAGCTAAAAACAACATTTGAC
AAACTAGAGACTGATACCCATTGGGTCCCAGTGAGTTGGTTACATTCATAA

Translation (576 aa):
MPALATGSACDMGLYELLAALPAQLQPHVDSQEDLTFLWDVFGEKSLHSLVKIHEKLHCYEKQNPLPILH
GAAALADDLTEELQNKLPNSEIRELLKLLSKPNVKALLSVHDTVAQKSYDPVLPPVPDDIDDEEDSVKII
RLVKNSEPLGATIKKDEQTGAITVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIKILSQSKG
AITFKIIPSTKEETPSKEGKIFIKALFDYDPKEDKAIPCKEAGLSFRKGDILQIMSQDDVTWWQAKHEGD
ANPRAGLIPSKHFQERRLALRRPEIVVQPLKLSNTKSSGFRRSFRLSRKNKKINKSMYECKKSEQYDTAD
VPTYEEVTPYRRQIHDKYRLIVLVGPVGVGLNELKRKLLMSDAQHYGVIVPHTTRARRSQESDGVEYIFI
SKHLFETDVQNNKFIEYGEYKNNYYGTSIDSVRSVLAKNKVCLLDVQPHTVKHLRTLEFKPYVIFIKPPS
IERLRETRKNAKIISSRDDQGTAKPFTEEDFQEMIKSAQIMESQYGHLFDKIIINDDLTVAFNELKTTFD
KLETDTHWVPVSWLHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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