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Report for CCDS5037.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5037.1 Public Homo sapiens 6 NDUFAF4 24 110 108 CCDS HistoryNCBI Gene:29078Re-query CCDS DB by CCDS ID:5037.1Re-query CCDS DB by GeneID:29078See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5037.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316149.8 ENSP00000358272.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316149.8Link to Ensembl Protein Viewer:ENSP00000358272.4Re-query CCDS DB by Nucleotide ID:ENST00000316149Re-query CCDS DB by Protein ID:ENSP00000358272
Original member Current member NCBI NM_014165.4 NP_054884.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014165.4Link to Protein Sequence:NP_054884.1Re-query CCDS DB by Nucleotide ID:NM_014165Re-query CCDS DB by Protein ID:NP_054884Link to BLAST:NP_054884.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_054884.1 175 Q9P032 175 100% 0 0

Chromosomal Locations for CCDS 5037.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 96891104 96891391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 96896744 96896847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 96897666 96897801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (528 nt):
ATGGGAGCACTAGTGATTCGCGGTATCAGGAATTTCAACCTAGAGAACCGAGCGGAACGGGAAATCAGCA
AGATGAAGCCCTCTGTCGCTCCCAGACACCCCTCTACCAACAGCCTCCTGCGAGAGCAGATTAGTCTCTA
TCCAGAAGTTAAAGGAGAGATTGCTCGTAAAGATGAAAAGCTGCTGTCGTTTCTAAAAGATGTGTATGTT
GATTCCAAAGATCCTGTGTCTTCCTTGCAGGTAAAAGCTGCTGAAACATGTCAAGAGCCGAAGGAATTCA
GATTGCCGAAAGACCATCATTTTGATATGATAAATATTAAGAGCATTCCCAAAGGCAAAATTTCCATTGT
AGAAGCATTGACACTTCTCAATAATCATAAGCTTTTCCCAGAAACCTGGACTGCTGAGAAAATAATGCAG
GAATACCAGTTAGAACAGAAAGATGTGAATTCTCTTCTTAAATATTTTGTTACTTTTGAAGTCGAAATCT
TCCCTCCTGAAGACAAGAAAGCAATACGATCAAAATGA

Translation (175 aa):
MGALVIRGIRNFNLENRAEREISKMKPSVAPRHPSTNSLLREQISLYPEVKGEIARKDEKLLSFLKDVYV
DSKDPVSSLQVKAAETCQEPKEFRLPKDHHFDMINIKSIPKGKISIVEALTLLNNHKLFPETWTAEKIMQ
EYQLEQKDVNSLLKYFVTFEVEIFPPEDKKAIRSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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