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Report for CCDS50734.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50734.1 Public Mus musculus 2 Rin2 23 108 98 CCDS HistoryNCBI Gene:74030Re-query CCDS DB by CCDS ID:50734.1Re-query CCDS DB by GeneID:74030See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50734.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094480.10 ENSMUSP00000092053.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094480.10Link to Ensembl Protein Viewer:ENSMUSP00000092053.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094480Re-query CCDS DB by Protein ID:ENSMUSP00000092053
Original member NCBI NM_028724.4 NP_083000.5 Updated not alive Link to Nucleotide Sequence:NM_028724.4Link to Protein Sequence:NP_083000.5Re-query CCDS DB by Nucleotide ID:NM_028724Re-query CCDS DB by Protein ID:NP_083000
Current member NCBI NM_028724.5 NP_083000.5 Accepted alive Link to Nucleotide Sequence:NM_028724.5Link to Protein Sequence:NP_083000.5Re-query CCDS DB by Nucleotide ID:NM_028724Re-query CCDS DB by Protein ID:NP_083000Link to BLAST:NP_083000.5

Chromosomal Locations for CCDS 50734.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 145822739 145822761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145844711 145844903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145848765 145848876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145851179 145851251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145858441 145858532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145860014 145861174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145876391 145876696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145878844 145878975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145883322 145883485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145885603 145885923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2577 nt):
ATGGACCCATTTTGCATTCTCAGCATGGTGAGACACAAGGATGGTGGCTACTCTGAAGACAAGGATGGGA
AGACATGTCCCCGAGACTCTGGCTATGACAGCCTCTCCAACAGGCTCAGCATTCTGGACCGGCTCCTGCA
TACCCATCCCATATGGCTGCAGCTGAGTCTGAGTGAGGAGGAGGCAGCAGAGGTCCTGCAGGCCCAGCCT
CCAGGGATCTTTTTGGTTCGGAAATCCTCCAAAATGCAGAAGAAAGTCCTCTCCCTTCGCCTGCCCTGTG
AATTTGGAGCACCTCTCAAAGAGTTTACTATAAAGGAAAGCACCTACACCTTTTCCCTGGAAGGCTCAGG
AATCAGCTTTGCAGATTTATTCCGGCTTATTGCCTTCTACTGCATCAGCAGGGACGTTTTGCCATTCACC
TTGAAGCTGCCTTATGCCATTTCAACAGCCAAGACGGAGTCTCAGCTTGAAGAACTAGCCCAACTGGGAC
TAAATTTTTGGAGCTCCTCGGCAGACAACAAACCCCTGAACTCCCCACCTCCCCATAGGCCTCTTCCCTC
AGCCGGCATCTGCCCTGCCTCCTTGCGTCAGCTCTGCCTTATAAATGGAGTGCATTCTATAAAAACCAGG
ACGCCTTCGGAGCTGGAGTGCAGCCAGACCAACGGAGCCTTGTGTTTTATTAATCCTCTTTTCTTGAAAG
TGCACAGCCAGGACCTCAGCACAGGCCCAAAGCGGCCGAGCACAAGGACTCCCAACGCGAATGGCACCGA
GAGACCTCGGTCCCCCCCACCCAGGCCCCCGCCACCCGCTATTAATAGTCTGCACACAAGCCCTGGGCTA
TCCAGGACTGAACCCCAGACGAGCATGCCAGAAACAGTCAACCATAGCAAACATGGGAACGTAGCTCTGC
TTGGAACAAAACCAACTCCCATCCCTCCACCCCGGCTGAAGAAGCAGGCTTCTTTTTTGGAAGCAGAAAG
CAGCGCCAAGACCTTGACTGCCCGCCGGCCCAGCCGGAGGTCGGAGCCGGAGCCCGAGCTAGAGCTGGAG
TTAGAGATGGGCACAGCTGGGCACGCAGGTGGAGCCCCGCCTAGGGACGCCCCCGGGGATTGCACAAGGG
CGCCGCCGCCCGGCTCTGAATCACAGCCACCACCGTGCCATGGAGCCAGGCAGAGGCTGAGCGACATGAG
CCTTTCCACTTCCTCCTCCGACTCGCTGGAGTTCGACCGGAGCATGCCTCTGTATGGGTACGAGGCTGAC
ACCACCAGCAGCCTGGAGGACTACGAAGGGGAGAGTGACCAAGAGACCATGGCACCTCCCATCAAGTCCA
AAAAGAAGAGGAACAGCTCTTTTGTGCTGCCCAAGCTTGTCAAGTCCCAGTTGCGAAAGATGAGCGGGGT
GTTCAGCTCCTTCATGACCCCTGAGAAGCGGATGGTCCGCAGGATCGCCGAGCTGTCCCGGGACAAATGC
ACCTATTTTGGGTGCTTGGTGCAGGACTACGTGAGCTTCCTGAAGGAGAACAAGGAGTGCCATGTGTCCA
GCACCGATATGCTGCAGACCATCCGGCAGTTTATGACCCAGGTCAAGAACTATTTGTCTCAGAGCTCTGA
ACTGGACCCCCCTATTGAGTCACTGATCCCAGAAGACCAAATTGATGTGGTGTTGGAGAAGGCCATGCAC
AAATGTATCTTGAAGCCCCTCAAGGGCCATGTGGAGGCCATGCTGAAGGACTTCCACACGGCTGACGGCT
CGTGGAAACAACTCAAGGAAAACCTACAACTCGTGCGGCAGAGGAACCCACAGGAGCTGGGGGTCTTTGC
CCCAACCCCTGACTTGATGGAGCTGGAGAAAATCAAGCTTAAATTCATGACCATGCAGAAGATGTATTCG
CCAGAAAAGAAAGTCATGCTTTTGCTACGGGTCTGTAAGCTCATCTACACTGTCATGGAGAACAACTCAG
GGAGGATGTACGGTGCAGACGACTTCTTGCCAGTCCTGACCTATGTCATAGCTCAGTGTGACATGCTTGA
ACTGGACACGGAAATCGAGTACATGATGGAACTCCTGGACCCATCACTGCTGCACGGAGAAGGAGGCTAT
TACTTGACCAGTGCCTATGGGGCGCTATCTCTGATAAAGAATTTCCAAGAAGAACAGGCTGCGAGACTGC
TCAGCTCCGAAGCCAGGGACACGCTGAGGCAGTGGCACAAGCGGAGAACCACCAACCGAACTATCCCCTC
CGTTGACGACTTTCAGAATTACCTCCGAGTTGCCTTCCAAGAGGTCAACAGCGGATGCACTGGGAAGACC
CTCCTTGTGAGACCGTACATCACCACAGAGGATGTGTGTCAGCTCTGTGCTGAGAAATTTAAGGTGGAGG
ACCCTGAAGAGTACAGCCTGTTTCTCTTTGTTGATGAGACATGGCAACAACTGGCAGAGGACACTTATCC
TCAGAAGATCAAGGCCGAACTGCACAGCCGGCCTCAGCCCCACATCTTCCACTTTGTCTACAAACGAATC
AAGAGTGATCCTTACGGGGTGATTTTCCAGAATGGAGAAGACCTCACTCCCTCATAG

Translation (858 aa):
MDPFCILSMVRHKDGGYSEDKDGKTCPRDSGYDSLSNRLSILDRLLHTHPIWLQLSLSEEEAAEVLQAQP
PGIFLVRKSSKMQKKVLSLRLPCEFGAPLKEFTIKESTYTFSLEGSGISFADLFRLIAFYCISRDVLPFT
LKLPYAISTAKTESQLEELAQLGLNFWSSSADNKPLNSPPPHRPLPSAGICPASLRQLCLINGVHSIKTR
TPSELECSQTNGALCFINPLFLKVHSQDLSTGPKRPSTRTPNANGTERPRSPPPRPPPPAINSLHTSPGL
SRTEPQTSMPETVNHSKHGNVALLGTKPTPIPPPRLKKQASFLEAESSAKTLTARRPSRRSEPEPELELE
LEMGTAGHAGGAPPRDAPGDCTRAPPPGSESQPPPCHGARQRLSDMSLSTSSSDSLEFDRSMPLYGYEAD
TTSSLEDYEGESDQETMAPPIKSKKKRNSSFVLPKLVKSQLRKMSGVFSSFMTPEKRMVRRIAELSRDKC
TYFGCLVQDYVSFLKENKECHVSSTDMLQTIRQFMTQVKNYLSQSSELDPPIESLIPEDQIDVVLEKAMH
KCILKPLKGHVEAMLKDFHTADGSWKQLKENLQLVRQRNPQELGVFAPTPDLMELEKIKLKFMTMQKMYS
PEKKVMLLLRVCKLIYTVMENNSGRMYGADDFLPVLTYVIAQCDMLELDTEIEYMMELLDPSLLHGEGGY
YLTSAYGALSLIKNFQEEQAARLLSSEARDTLRQWHKRRTTNRTIPSVDDFQNYLRVAFQEVNSGCTGKT
LLVRPYITTEDVCQLCAEKFKVEDPEEYSLFLFVDETWQQLAEDTYPQKIKAELHSRPQPHIFHFVYKRI
KSDPYGVIFQNGEDLTPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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