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Report for CCDS5082.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5082.2 Public Homo sapiens 6 DDO 24 110 108 CCDS HistoryNCBI Gene:8528Re-query CCDS DB by CCDS ID:5082.2Re-query CCDS DB by GeneID:8528See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 5082.1
The coding region has been updated to start at a downstream alternate, in-frame start codon that is supported by conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 5082.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368924.9 ENSP00000357920.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368924.9Link to Ensembl Protein Viewer:ENSP00000357920.4Re-query CCDS DB by Nucleotide ID:ENST00000368924Re-query CCDS DB by Protein ID:ENSP00000357920
Original member Current member NCBI NM_001372108.2 NP_001359037.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001372108.2Link to Protein Sequence:NP_001359037.1Re-query CCDS DB by Nucleotide ID:NM_001372108Re-query CCDS DB by Protein ID:NP_001359037Link to BLAST:NP_001359037.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001359037.1 341 Q99489-1 341 100% 0 0

Chromosomal Locations for CCDS 5082.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 110392775 110393342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110404774 110404950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110408334 110408442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110413291 110413462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGGACACAGCACGGATTGCAGTTGTCGGGGCAGGTGTGGTGGGGCTCTCCACGGCTGTGTGCATCTCCA
AACTGGTGCCCCGATGCTCCGTTACCATCATTTCAGACAAGTTTACTCCAGATACCACCAGTGATGTGGC
AGCCGGAATGCTTATTCCTCACACTTATCCAGATACACCCATTCACACGCAGAAGCAGTGGTTCAGAGAA
ACCTTTAATCACCTCTTTGCAATTGCCAATTCTGCAGAAGCTGGAGATGCTGGTGTTCATTTGGTATCAG
GTTGGCAGATATTTCAGAGCACTCCGACTGAAGAAGTGCCATTCTGGGCTGACGTGGTTCTGGGATTTCG
AAAGATGACTGAGGCTGAGCTGAAGAAATTCCCCCAGTATGTGTTTGGTCAGGCTTTTACAACCCTGAAA
TGTGAATGCCCTGCCTACCTCCCGTGGTTGGAGAAAAGGATAAAGGGAAGTGGAGGCTGGACACTCACTC
GGCGAATAGAAGACCTGTGGGAACTTCATCCGTCCTTTGACATCGTGGTCAACTGTTCAGGCCTTGGAAG
CAGACAGCTTGCAGGAGACTCAAAGATTTTCCCTGTAAGGGGCCAAGTCCTCCAAGTTCAGGCTCCCTGG
GTGGAGCATTTTATCCGAGATGGCAGTGGGCTGACATATATTTATCCTGGTACATCCCATGTAACCCTAG
GTGGAACTAGGCAAAAAGGGGACTGGAATCTGTCCCCGGATGCAGAAAATAGCAGAGAGATTCTTTCCCG
ATGCTGTGCTCTGGAGCCCTCCCTCCACGGAGCCTGCAACATCAGGGAGAAGGTGGGCTTGAGGCCCTAC
AGGCCAGGCGTGCGACTGCAGACAGAGCTCCTTGCGCGAGATGGACAGAGGCTGCCTGTAGTCCACCACT
ATGGCCATGGGAGTGGGGGCATCTCAGTGCACTGGGGCACTGCTCTGGAGGCCGCCAGGCTGGTGAGCGA
GTGTGTCCATGCCCTCAGGACCCCCATTCCCAAGTCAAACCTGTAG

Translation (341 aa):
MDTARIAVVGAGVVGLSTAVCISKLVPRCSVTIISDKFTPDTTSDVAAGMLIPHTYPDTPIHTQKQWFRE
TFNHLFAIANSAEAGDAGVHLVSGWQIFQSTPTEEVPFWADVVLGFRKMTEAELKKFPQYVFGQAFTTLK
CECPAYLPWLEKRIKGSGGWTLTRRIEDLWELHPSFDIVVNCSGLGSRQLAGDSKIFPVRGQVLQVQAPW
VEHFIRDGSGLTYIYPGTSHVTLGGTRQKGDWNLSPDAENSREILSRCCALEPSLHGACNIREKVGLRPY
RPGVRLQTELLARDGQRLPVVHHYGHGSGGISVHWGTALEAARLVSECVHALRTPIPKSNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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