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Report for CCDS50873.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50873.1 Public Mus musculus 3 Gyg1 23 108 98 CCDS HistoryNCBI Gene:27357Re-query CCDS DB by CCDS ID:50873.1Re-query CCDS DB by GeneID:27357See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50873.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000178328.7 ENSMUSP00000136035.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178328.7Link to Ensembl Protein Viewer:ENSMUSP00000136035.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178328Re-query CCDS DB by Protein ID:ENSMUSP00000136035
Original member NCBI NM_013755.4 NP_038783.1 Updated not alive Link to Nucleotide Sequence:NM_013755.4Link to Protein Sequence:NP_038783.1Re-query CCDS DB by Nucleotide ID:NM_013755Re-query CCDS DB by Protein ID:NP_038783
Current member NCBI NM_013755.5 NP_038783.1 Accepted alive Link to Nucleotide Sequence:NM_013755.5Link to Protein Sequence:NP_038783.1Re-query CCDS DB by Nucleotide ID:NM_013755Re-query CCDS DB by Protein ID:NP_038783Link to BLAST:NP_038783.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038783.1 333 Q9R062 333 100% 0 0

Chromosomal Locations for CCDS 50873.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 20122691 20122864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20125258 20125477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20138017 20138143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20150539 20150701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20150953 20151127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20152730 20152865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 20154998 20155004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGACAGATCAGGCTTTTGTGACGCTGACCACAAACGATGCCTATGCCAAAGGTGCGCTGGTCCTGGGCT
CATCTTTGAAACAGCACAGGACTACTAGGAGGATGGTTGTACTCACCAGCCCACAGGTTTCAGACTCCAT
GAGAAAAGTTTTAGAGACTGTCTTTGATGACGTCATCATGGTAGATGTCTTGGACAGTGGTGATTCTGCT
CATCTAACCTTAATGAAGAGACCTGAGTTGGGCATCACATTGACTAAACTCCACTGCTGGTCACTTACTC
AGTATTCCAAATGTGTGTTCATGGATGCAGATACTCTGGTCCTCTCAAATATTGATGATCTGTTTGAAAG
AGAAGAATTATCAGCAGCACCAGACCCAGGGTGGCCTGACTGTTTCAATTCTGGAGTCTTTGTCTATCAA
CCCTCCATTGAAACGTATAACCAGCTGTTGCATCTGGCTTCTGAGCAAGGTAGTTTTGATGGTGGGGACC
AGGGCCTACTGAATACATATTTTAGTGGCTGGGCAACGACAGATATCACAAAACACCTGCCATTTGTGTA
TAACCTAAGCAGCATTTCAATATACTCCTACCTCCCGGCATTTAAAGCGTTTGGTAAAAATGCCAAAGTT
GTGCACTTCCTGGGACGAACCAAGCCATGGAATTACACTTATAACCCCCAAACAAAAAGTGTCAACTGTG
ACTCCCAGGACCCAACCGTGAGTCACCCAGAGTTTCTGAACCTGTGGTGGGACACCTTCACCACCAACGT
CTTACCCCTGCTCCAACACCATGGCCTTGTCAAAGATGCCAGCTCCTATCTAATGATGGAACATGTCTCA
GGAGCCTTGTCAGACCTGTCCTTTGGGGAGGCCCCAGCTGCACCACAACCTTCTATGTCCTCAGAAGAAA
GGAAGGAACGGTGGGAACAGGGCCAGGCCGATTACATGGGAGCAGATTCTTTTGATAACATCAAGAGAAA
ACTTGACACTTACCTGCAATAG

Translation (333 aa):
MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTTRRMVVLTSPQVSDSMRKVLETVFDDVIMVDVLDSGDSA
HLTLMKRPELGITLTKLHCWSLTQYSKCVFMDADTLVLSNIDDLFEREELSAAPDPGWPDCFNSGVFVYQ
PSIETYNQLLHLASEQGSFDGGDQGLLNTYFSGWATTDITKHLPFVYNLSSISIYSYLPAFKAFGKNAKV
VHFLGRTKPWNYTYNPQTKSVNCDSQDPTVSHPEFLNLWWDTFTTNVLPLLQHHGLVKDASSYLMMEHVS
GALSDLSFGEAPAAPQPSMSSEERKERWEQGQADYMGADSFDNIKRKLDTYLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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