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Report for CCDS5115.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5115.1 Public Homo sapiens 6 VGLL2 24 110 108 CCDS HistoryNCBI Gene:245806Re-query CCDS DB by CCDS ID:5115.1Re-query CCDS DB by GeneID:245806See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5115.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000326274.6 ENSP00000320957.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000326274.6Link to Ensembl Protein Viewer:ENSP00000320957.5Re-query CCDS DB by Nucleotide ID:ENST00000326274Re-query CCDS DB by Protein ID:ENSP00000320957
Original member Current member NCBI NM_182645.3 NP_872586.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182645.3Link to Protein Sequence:NP_872586.1Re-query CCDS DB by Nucleotide ID:NM_182645Re-query CCDS DB by Protein ID:NP_872586Link to BLAST:NP_872586.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_872586.1 317 Q8N8G2-1 317 100% 0 0

Chromosomal Locations for CCDS 5115.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 117265764 117265844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 117268182 117268491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 117270543 117271064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 117272454 117272494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGAGCTGTCTGGATGTTATGTACCAAGTCTATGGTCCTCCGCAGCCCTACTTCGCAGCCGCCTACACCC
CCTACCACCAGAAACTAGCCTATTATTCCAAAATGCAGGAAGCGCAGGAGTGCAATGCCAGCCCCAGCAG
CAGTGGCAGCGGCAGCTCCTCATTTTCCAGCCAAACCCCAGCCAGTATAAAAGAGGAAGAAGGCAGCCCA
GAGAAAGAGCGCCCACCAGAGGCAGAGTACATCAACTCCCGCTGCGTCCTCTTCACTTATTTCCAGGGGG
ACATCAGCTCCGTGGTGGATGAACATTTCAGCAGGGCCCTGAGCCAACCCAGCAGCTACTCTCCTAGCTG
TACCAGCAGCAAAGCACCAAGGAGCTCTGGGCCCTGGCGAGACTGCTCCTTCCCGATGAGCCAGCGCAGC
TTCCCCGCCTCCTTCTGGAATAGCGCGTACCAGGCGCCAGTGCCCCCGCCGCTGGGCAGCCCTCTGGCCA
CCGCGCACTCGGAGCTGCCCTTCGCCGCCGCCGACCCCTACTCGCCCGCCGCGCTGCATGGCCACCTGCA
CCAGGGCGCCACGGAGCCCTGGCACCACGCGCACCCGCACCACGCGCACCCGCATCACCCCTACGCCCTG
GGCGGCGCCCTCGGCGCCCAGGCCGCCCCCTACCCGCGCCCCGCCGCCGTGCACGAAGTCTACGCGCCGC
ACTTCGACCCGCGCTATGGGCCGCTGCTGATGCCAGCCGCCTCGGGGCGCCCGGCCCGCCTCGCAACCGC
CCCGGCGCCCGCGCCCGGCAGTCCTCCCTGCGAGCTCTCCGGCAAAGGCGAGCCGGCGGGCGCCGCGTGG
GCCGGGCCCGGGGGACCCTTCGCGAGCCCCTCGGGGGACGTGGCCCAGGGTCTGGGCCTCAGCGTGGACT
CAGCTCGTCGTTATTCCCTCTGTGGTGCATCCCTCCTGAGCTGA

Translation (317 aa):
MSCLDVMYQVYGPPQPYFAAAYTPYHQKLAYYSKMQEAQECNASPSSSGSGSSSFSSQTPASIKEEEGSP
EKERPPEAEYINSRCVLFTYFQGDISSVVDEHFSRALSQPSSYSPSCTSSKAPRSSGPWRDCSFPMSQRS
FPASFWNSAYQAPVPPPLGSPLATAHSELPFAAADPYSPAALHGHLHQGATEPWHHAHPHHAHPHHPYAL
GGALGAQAAPYPRPAAVHEVYAPHFDPRYGPLLMPAASGRPARLATAPAPAPGSPPCELSGKGEPAGAAW
AGPGGPFASPSGDVAQGLGLSVDSARRYSLCGASLLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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