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Report for CCDS515.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
515.1 Public Homo sapiens 1 PLK3 24 110 108 CCDS HistoryNCBI Gene:1263Re-query CCDS DB by CCDS ID:515.1Re-query CCDS DB by GeneID:1263See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 515.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372201.5 ENSP00000361275.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372201.5Link to Ensembl Protein Viewer:ENSP00000361275.4Re-query CCDS DB by Nucleotide ID:ENST00000372201Re-query CCDS DB by Protein ID:ENSP00000361275
Original member Current member NCBI NM_004073.4 NP_004064.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004073.4Link to Protein Sequence:NP_004064.2Re-query CCDS DB by Nucleotide ID:NM_004073Re-query CCDS DB by Protein ID:NP_004064Link to BLAST:NP_004064.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004064.2 646 Q9H4B4 646 100% 0 0

Chromosomal Locations for CCDS 515.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 44800464 44800673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44800840 44800947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44801036 44801152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44801622 44801751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44801845 44801932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44802760 44802855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44802955 44803153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44803268 44803391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44803600 44803691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44803931 44804024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44804163 44804246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44804339 44804501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44804650 44804779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44805266 44805379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44805487 44805678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1941 nt):
ATGGAGCCTGCCGCCGGTTTCCTGTCTCCGCGCCCCTTCCAGCGTGCGGCCGCCGCGCCCGCTCCCCCGG
CCGGGCCCGGGCCGCCTCCGAGTGCCTTGCGCGGACCTGAGCTGGAGATGCTGGCCGGGCTACCGACGTC
AGACCCCGGGCGCCTCATCACGGACCCGCGCAGCGGCCGCACCTACCTCAAAGGCCGCTTGTTGGGCAAG
GGGGGCTTCGCCCGCTGCTACGAGGCCACTGACACAGAGACTGGCAGCGCCTACGCTGTCAAAGTCATCC
CGCAGAGCCGCGTCGCCAAGCCGCATCAGCGCGAGAAGATCCTAAATGAGATTGAGCTGCACCGAGACCT
GCAGCACCGCCACATCGTGCGTTTTTCGCACCACTTTGAGGACGCTGACAACATCTACATTTTCTTGGAG
CTCTGCAGCCGAAAGTCCCTGGCCCACATCTGGAAGGCCCGGCACACCCTGTTGGAGCCAGAAGTGCGCT
ACTACCTGCGGCAGATCCTTTCTGGCCTCAAGTACTTGCACCAGCGCGGCATCTTGCACCGGGACCTCAA
GTTGGGAAATTTTTTCATCACTGAGAACATGGAACTGAAGGTGGGGGATTTTGGGCTGGCAGCCCGGTTG
GAGCCTCCGGAGCAGAGGAAGAAGACCATCTGTGGCACCCCCAACTATGTGGCTCCAGAAGTGCTGCTGA
GACAGGGCCACGGCCCTGAGGCGGATGTATGGTCACTGGGCTGTGTCATGTACACGCTGCTCTGCGGGAG
CCCTCCCTTTGAGACGGCTGACCTGAAGGAGACGTACCGCTGCATCAAGCAGGTTCACTACACGCTGCCT
GCCAGCCTCTCACTGCCTGCCCGGCAGCTCCTGGCCGCCATCCTTCGGGCCTCACCCCGAGACCGCCCCT
CTATTGACCAGATCCTGCGCCATGACTTCTTTACCAAGGGCTACACCCCCGATCGACTCCCTATCAGCAG
CTGCGTGACAGTCCCAGACCTGACACCCCCCAACCCAGCTAGGAGTCTGTTTGCCAAAGTTACCAAGAGC
CTCTTTGGCAGAAAGAAGAAGAGTAAGAATCATGCCCAGGAGAGGGATGAGGTCTCCGGTTTGGTGAGCG
GCCTCATGCGCACATCCGTTGGCCATCAGGATGCCAGGCCAGAGGCTCCAGCAGCTTCTGGCCCAGCCCC
TGTCAGCCTGGTAGAGACAGCACCTGAAGACAGCTCACCCCGTGGGACACTGGCAAGCAGTGGAGATGGA
TTTGAAGAAGGTCTGACTGTGGCCACAGTAGTGGAGTCAGCCCTTTGTGCTCTGAGAAATTGTATAGCCT
TCATGCCCCCAGCGGAACAGAACCCGGCCCCCCTGGCCCAGCCAGAGCCTCTGGTGTGGGTCAGCAAGTG
GGTTGACTACTCCAATAAGTTCGGCTTTGGGTATCAACTGTCCAGCCGCCGTGTGGCTGTGCTCTTCAAC
GATGGCACACATATGGCCCTGTCGGCCAACAGAAAGACTGTGCACTACAATCCCACCAGCACAAAGCACT
TCTCCTTCTCCGTGGGTGCTGTGCCCCGGGCCCTGCAGCCTCAGCTGGGTATCCTGCGGTACTTCGCCTC
CTACATGGAGCAGCACCTCATGAAGGGTGGAGATCTGCCCAGTGTGGAAGAGGTAGAGGTACCTGCTCCG
CCCTTGCTGCTGCAGTGGGTCAAGACGGATCAGGCTCTCCTCATGCTGTTTAGTGATGGCACTGTCCAGG
TGAACTTCTACGGGGACCACACCAAGCTGATTCTCAGTGGCTGGGAGCCCCTCCTTGTGACTTTTGTGGC
CCGAAATCGTAGTGCTTGTACTTACCTCGCTTCCCACCTTCGGCAGCTGGGCTGCTCTCCAGACCTGCGG
CAGCGACTCCGCTATGCTCTGCGCCTGCTCCGGGACCGCAGCCCAGCCTAG

Translation (646 aa):
MEPAAGFLSPRPFQRAAAAPAPPAGPGPPPSALRGPELEMLAGLPTSDPGRLITDPRSGRTYLKGRLLGK
GGFARCYEATDTETGSAYAVKVIPQSRVAKPHQREKILNEIELHRDLQHRHIVRFSHHFEDADNIYIFLE
LCSRKSLAHIWKARHTLLEPEVRYYLRQILSGLKYLHQRGILHRDLKLGNFFITENMELKVGDFGLAARL
EPPEQRKKTICGTPNYVAPEVLLRQGHGPEADVWSLGCVMYTLLCGSPPFETADLKETYRCIKQVHYTLP
ASLSLPARQLLAAILRASPRDRPSIDQILRHDFFTKGYTPDRLPISSCVTVPDLTPPNPARSLFAKVTKS
LFGRKKKSKNHAQERDEVSGLVSGLMRTSVGHQDARPEAPAASGPAPVSLVETAPEDSSPRGTLASSGDG
FEEGLTVATVVESALCALRNCIAFMPPAEQNPAPLAQPEPLVWVSKWVDYSNKFGFGYQLSSRRVAVLFN
DGTHMALSANRKTVHYNPTSTKHFSFSVGAVPRALQPQLGILRYFASYMEQHLMKGGDLPSVEEVEVPAP
PLLLQWVKTDQALLMLFSDGTVQVNFYGDHTKLILSGWEPLLVTFVARNRSACTYLASHLRQLGCSPDLR
QRLRYALRLLRDRSPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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