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Report for CCDS5168.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5168.1 Public Homo sapiens 6 TBPL1 24 110 108 CCDS HistoryNCBI Gene:9519Re-query CCDS DB by CCDS ID:5168.1Re-query CCDS DB by GeneID:9519See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5168.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000237264.9 ENSP00000237264.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000237264.9Link to Ensembl Protein Viewer:ENSP00000237264.3Re-query CCDS DB by Nucleotide ID:ENST00000237264Re-query CCDS DB by Protein ID:ENSP00000237264
Original member Current member EBI ENST00000613034.4 ENSP00000478795.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000613034.4Link to Ensembl Protein Viewer:ENSP00000478795.1Re-query CCDS DB by Nucleotide ID:ENST00000613034Re-query CCDS DB by Protein ID:ENSP00000478795
Original member Current member NCBI NM_001253676.2 NP_001240605.1 Accepted alive Link to Nucleotide Sequence:NM_001253676.2Link to Protein Sequence:NP_001240605.1Re-query CCDS DB by Nucleotide ID:NM_001253676Re-query CCDS DB by Protein ID:NP_001240605Link to BLAST:NP_001240605.1
Original member Current member NCBI NM_004865.4 NP_004856.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004865.4Link to Protein Sequence:NP_004856.1Re-query CCDS DB by Nucleotide ID:NM_004865Re-query CCDS DB by Protein ID:NP_004856Link to BLAST:NP_004856.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240605.1 186 P62380 186 100% 0 0
NP_004856.1 186 P62380 186 100% 0 0

Chromosomal Locations for CCDS 5168.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 133980126 133980260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 133982568 133982650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 133982817 133982880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 133984376 133984479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 133984577 133984671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 133986961 133987040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGGATGCAGACAGTGATGTTGCATTGGACATTCTAATTACAAATGTAGTCTGTGTTTTTAGAACAAGAT
GTCATTTAAACTTAAGGAAGATTGCTTTGGAAGGAGCAAATGTAATTTATAAACGTGATGTTGGAAAAGT
ATTAATGAAGCTTAGAAAACCTAGAATTACAGCTACAATTTGGTCCTCAGGAAAAATTATTTGCACTGGA
GCAACAAGTGAAGAAGAAGCTAAATTTGGTGCCAGACGCTTAGCCCGTAGTCTGCAGAAACTAGGTTTTC
AGGTAATATTTACAGATTTTAAGGTTGTTAACGTTCTGGCAGTGTGTAACATGCCATTTGAAATCCGTTT
GCCAGAATTCACAAAGAACAATAGACCTCATGCCAGTTACGAACCTGAACTTCATCCTGCTGTGTGCTAT
CGGATAAAATCTCTAAGAGCTACATTACAGATTTTTTCAACAGGAAGTATCACAGTAACAGGGCCCAATG
TAAAGGCTGTTGCTACTGCTGTGGAACAGATTTACCCATTTGTGTTTGAAAGCAGGAAAGAAATTTTATA
A

Translation (186 aa):
MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATIWSSGKIICTG
ATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCY
RIKSLRATLQIFSTGSITVTGPNVKAVATAVEQIYPFVFESRKEIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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