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Report for CCDS51894.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51894.1 Public Mus musculus 6 Clec4a2 23 108 98 CCDS HistoryNCBI Gene:26888Re-query CCDS DB by CCDS ID:51894.1Re-query CCDS DB by GeneID:26888See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51894.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032248.7 ENSMUSP00000032248.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032248.7Link to Ensembl Protein Viewer:ENSMUSP00000032248.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032248Re-query CCDS DB by Protein ID:ENSMUSP00000032248
Original member NCBI NM_001170333.1 NP_001163804.1 Updated not alive Link to Nucleotide Sequence:NM_001170333.1Link to Protein Sequence:NP_001163804.1Re-query CCDS DB by Nucleotide ID:NM_001170333Re-query CCDS DB by Protein ID:NP_001163804
Current member NCBI NM_001170333.2 NP_001163804.1 Accepted alive Link to Nucleotide Sequence:NM_001170333.2Link to Protein Sequence:NP_001163804.1Re-query CCDS DB by Nucleotide ID:NM_001170333Re-query CCDS DB by Protein ID:NP_001163804Link to BLAST:NP_001163804.1

Chromosomal Locations for CCDS 51894.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 123123588 123123669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123124970 123125086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123127952 123128053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123139057 123139128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123139251 123139408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123140656 123140768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123142363 123142507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGGCTTCAGAAATCACTTATGCAGAAGTGAAGTTCAAGAATGAATCCAACTCCTTGCACACCTACTCAG
AATCTCCTGCAGCTCCCAGAGAGAAACCTATCCGTGATCTAAGAAAGCCTGGTTCCCCCTCACTGCTTCT
TACATCCCTGATGCTACTTCTCCTGCTGCTGGCAATCACATTCTTAGTTGCTTTTATCATTTATTTTCAA
AAGTACTCTCAACTTCTTGAAGAAAAAAAAGCTGCAAAAAATATAATGCACAATGAATTGAACTGCACAA
AAAGTGTTTCACCCATGGAAGCACCCCCCATTGGACAAAGGGCCCTGACATTAGAGTCAATTGAGATAGA
CTTGGGTATCTTGGCACCTGAGGACAAAGTCTGGAGCTGTTGCCCAAAGGATTGGAGGCTATTTGGTTCC
CACTGCTACTTGGTTCCCACAGTTTCTTCATCAGCATCTTGGAACAAGAGTGAGGAGAACTGCTCCCGCA
TGGGTGCTCATCTAGTGGTGATCCAAAGCCAGGAAGAGCAGGATTTCATCACTGGGATCTTGGACACTCA
TGCTGCTTATTTTATAGGGTTGTGGGATACAGGCCATCGGCAATGGCAATGGGTTGATCAGACACCATAT
GAAGAAAGTATCACATTCTGGCACAATGGTGAGCCCAGCAGTGGCAATGAAAAATGTGCTACAATAATTT
ACCGTTGGAAGACTGGATGGGGCTGGAACGATATCTCTTGCAGTCTTAAACAGAAGTCAGTTTGTCAGAT
GAAGAAAATAAACTTATGA

Translation (262 aa):
MASEITYAEVKFKNESNSLHTYSESPAAPREKPIRDLRKPGSPSLLLTSLMLLLLLLAITFLVAFIIYFQ
KYSQLLEEKKAAKNIMHNELNCTKSVSPMEAPPIGQRALTLESIEIDLGILAPEDKVWSCCPKDWRLFGS
HCYLVPTVSSSASWNKSEENCSRMGAHLVVIQSQEEQDFITGILDTHAAYFIGLWDTGHRQWQWVDQTPY
EESITFWHNGEPSSGNEKCATIIYRWKTGWGWNDISCSLKQKSVCQMKKINL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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