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Report for CCDS5193.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5193.2 Public Homo sapiens 6 REPS1 24 110 108 CCDS HistoryNCBI Gene:85021Re-query CCDS DB by CCDS ID:5193.2Re-query CCDS DB by GeneID:85021See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 5193.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 5193.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258062.9 ENSP00000258062.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000258062.9Link to Ensembl Protein Viewer:ENSP00000258062.5Re-query CCDS DB by Nucleotide ID:ENST00000258062Re-query CCDS DB by Protein ID:ENSP00000258062
Original member Current member NCBI NM_031922.5 NP_114128.3 Accepted alive Link to Nucleotide Sequence:NM_031922.5Link to Protein Sequence:NP_114128.3Re-query CCDS DB by Nucleotide ID:NM_031922Re-query CCDS DB by Protein ID:NP_114128Link to BLAST:NP_114128.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114128.3 795 Q96D71-3 795 100% 0 0

Chromosomal Locations for CCDS 5193.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 138905064 138905132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138907495 138907600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138908668 138908816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138911276 138911371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138912765 138912950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138914697 138914761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138915858 138915976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138917555 138917624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138920215 138920316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138921037 138921124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138926401 138926481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138929977 138930098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138941335 138941489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138943513 138943576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138943853 138944015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138944498 138944622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138945219 138945372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138945501 138945697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138947790 138947913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138987530 138987682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2388 nt):
ATGGAAGGCTTAACGCTGAGCGATGCGGAGCAGAAATACTATTCAGATCTCTTCTCCTACTGCGACATTG
AGAGCACCAAGAAGGTGGTGGTCAACGGGCGGGTGCTGGAGCTGTTCCGGGCCGCGCAGCTGCCGAACGA
CGTGGTCCTACAGATCATGGAGCTTTGTGGTGCAACAAGACTTGGTTATTTTGGAAGAAGTCAGTTCTAC
ATTGCTTTGAAACTTGTAGCTGTTGCCCAGTCTGGTTTCCCTTTAAGAGTGGAAAGTATAAATACAGTAA
AGGACCTTCCTCTGCCAAGATTTGTTGCTTCAAAGAATGAACAGGAATCTCGCCATGCAGCCTCATATTC
TTCAGATTCTGAAAATCAAGGGTCGTATTCTGGTGTAATTCCCCCACCACCTGGCAGGGGGCAAGTGAAA
AAGGGATCCGTAAGCCATGATACGGTTCAGCCTCGTACATCTGCAGATGCACAGGAACCTGCATCCCCAG
TAGTTTCACCACAGCAATCCCCACCAACTTCTCCACACACATGGAGGAAGCACAGCCGTCATCCCAGCGG
TGGGAATAGTGAGAGGCCTCTCGCGGGACCTGGGCCATTTTGGTCTCCCTTTGGTGAAGCACAATCAGGT
TCTTCTGCTGGTGATGCAGTGTGGTCAGGGCATTCCCCACCTCCACCTCAAGAAAACTGGGTCAGTTTTG
CAGATACTCCACCAACCAGTACTCTTTTAACCATGCATCCTGCTTCTGTCCAGGACCAGACAACAGTACG
AACTGTAGCATCAGCTACAACTGCCATTGAAATTCGTAGGCAATCCAGTAGTTATGATGATCCCTGGAAA
ATAACAGATGAACAAAGACAGTATTATGTAAATCAGTTTAAAACCATTCAGCCTGATCTAAACGGATTTA
TTCCAGGATCTGCAGCTAAAGAGTTTTTTACAAAATCAAAACTTCCTATTCTTGAACTTTCTCATATTTG
GGAACTCTCAGACTTTGATAAAGATGGTGCATTGACACTGGATGAGTTTTGTGCTGCTTTTCATCTGGTG
GTTGCTAGGAAGAATGGCTATGATTTACCAGAAAAACTTCCTGAAAGCTTAATGCCCAAACTGATTGATT
TGGAAGATTCAGCAGATGTTGGGGATCAGCCAGGTGAGGTAGGTTATTCAGGCTCTCCTGCTGAAGCTCC
TCCAAGCAAGTCACCATCGATGCCATCACTAAACCAGACATGGCCTGAGCTGAATCAGAGCAGTGAGCAG
TGGGAGACATTTAGTGAACGCTCTTCAAGCTCACAAACTCTGACCCAATTTGATTCTAACATTGCACCAG
CTGATCCTGATACTGCTATTGTTCATCCAGTTCCCATTCGTATGACTCCAAGCAAAATCCACATGCAGGA
AATGGAACTTAAAAGAACTGGCAGCGATCATACAAATCCCACTAGCCCATTACTTGTGAAACCATCTGAC
CTTTTAGAAGAAAATAAGATAAATTCATCGGTGAAATTCGCTTCTGGTAATACTGTAGATGGTTACAGTA
GTTCAGACTCTTTTACTTCTGACCCAGAACAGATCGGGAGCAATGTAACTCGTCAAAGGTCTCATTCAGG
AACGTCGCCTGATAACACTGCACCACCACCTCCCCCTCCAAGGCCACAGCCCTCTCATTCTAGATCATCA
TCTTTAGATATGAATCGGACCTTTACAGTCACCACAGGACAACAACAGGCTGGAGTTGTTGCCCATCCTC
CTGCAGTGCCTCCAAGACCACAGCCCTCACAGGCTCCTGGTCCTGCTGTGCATCGCCCAGTGGATGCCGA
TGGCCTCATAACTCACACTAGTACCTCACCTCAGCAGATACCAGAGCAACCAAATTTTGCAGATTTCAGT
CAGTTTGAAGTATTTGCTGCATCAAATGTAAACGACGAACAAGATGATGAAGCCGAGAAACATCCAGAAG
TCCTGCCGGCTGAAAAAGCTTCTGATCCTGCAAGTTCTCTTCGAGTTGCCAAAACAGATAGTAAAACTGA
AGAAAAGACAGCTGCTAGTGCTCCTGCCAATGTGAGCAAAGGCACAACACCACTTGCTCCACCACCTAAA
CCTGTTCGAAGAAGATTAAAATCAGAAGATGAATTAAGGCCAGAAGTTGATGAACATACACAAAAGACGG
GTGTCTTAGCTGCTGTTCTTGCATCACAACCTTCTATTCCCAGATCTGTTGGGAAAGATAAGAAAGCTAT
TCAGGCATCAATTAGACGTAATAAGGAAACCAACACCGTTTTGGCCAGATTGAATAGCGAATTGCAGCAA
CAATTAAAGGATGTTCTTGAGGAGAGAATTTCCCTGGAAGTTCAACTGGAACAACTTCGACCATTCTCTC
ACCTATAA

Translation (795 aa):
MEGLTLSDAEQKYYSDLFSYCDIESTKKVVVNGRVLELFRAAQLPNDVVLQIMELCGATRLGYFGRSQFY
IALKLVAVAQSGFPLRVESINTVKDLPLPRFVASKNEQESRHAASYSSDSENQGSYSGVIPPPPGRGQVK
KGSVSHDTVQPRTSADAQEPASPVVSPQQSPPTSPHTWRKHSRHPSGGNSERPLAGPGPFWSPFGEAQSG
SSAGDAVWSGHSPPPPQENWVSFADTPPTSTLLTMHPASVQDQTTVRTVASATTAIEIRRQSSSYDDPWK
ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLV
VARKNGYDLPEKLPESLMPKLIDLEDSADVGDQPGEVGYSGSPAEAPPSKSPSMPSLNQTWPELNQSSEQ
WETFSERSSSSQTLTQFDSNIAPADPDTAIVHPVPIRMTPSKIHMQEMELKRTGSDHTNPTSPLLVKPSD
LLEENKINSSVKFASGNTVDGYSSSDSFTSDPEQIGSNVTRQRSHSGTSPDNTAPPPPPPRPQPSHSRSS
SLDMNRTFTVTTGQQQAGVVAHPPAVPPRPQPSQAPGPAVHRPVDADGLITHTSTSPQQIPEQPNFADFS
QFEVFAASNVNDEQDDEAEKHPEVLPAEKASDPASSLRVAKTDSKTEEKTAASAPANVSKGTTPLAPPPK
PVRRRLKSEDELRPEVDEHTQKTGVLAAVLASQPSIPRSVGKDKKAIQASIRRNKETNTVLARLNSELQQ
QLKDVLEERISLEVQLEQLRPFSHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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