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Report for CCDS5205.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5205.1 Public Homo sapiens 6 STX11 24 110 108 CCDS HistoryNCBI Gene:8676Re-query CCDS DB by CCDS ID:5205.1Re-query CCDS DB by GeneID:8676See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5205.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367568.5 ENSP00000356540.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367568.5Link to Ensembl Protein Viewer:ENSP00000356540.4Re-query CCDS DB by Nucleotide ID:ENST00000367568Re-query CCDS DB by Protein ID:ENSP00000356540
Original member Current member EBI ENST00000698355.1 ENSP00000513678.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698355.1Link to Ensembl Protein Viewer:ENSP00000513678.1Re-query CCDS DB by Nucleotide ID:ENST00000698355Re-query CCDS DB by Protein ID:ENSP00000513678
Original member Current member EBI ENST00000698356.1 ENSP00000513679.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698356.1Link to Ensembl Protein Viewer:ENSP00000513679.1Re-query CCDS DB by Nucleotide ID:ENST00000698356Re-query CCDS DB by Protein ID:ENSP00000513679
Original member Current member EBI ENST00000698357.1 ENSP00000513680.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698357.1Link to Ensembl Protein Viewer:ENSP00000513680.1Re-query CCDS DB by Nucleotide ID:ENST00000698357Re-query CCDS DB by Protein ID:ENSP00000513680
Original member Current member NCBI NM_003764.4 NP_003755.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003764.4Link to Protein Sequence:NP_003755.2Re-query CCDS DB by Nucleotide ID:NM_003764Re-query CCDS DB by Protein ID:NP_003755Link to BLAST:NP_003755.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003755.2 287 O75558 287 100% 0 0

Chromosomal Locations for CCDS 5205.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 144186628 144187491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGAAAGACCGGCTAGCAGAACTTCTGGACTTGTCCAAGCAATATGACCAGCAGTTCCCAGACGGGGACG
ATGAGTTTGACTCGCCCCACGAGGACATCGTGTTCGAGACGGACCACATCCTGGAGTCCCTGTACCGAGA
CATCCGGGACATTCAGGATGAAAACCAGCTGCTGGTGGCCGACGTGAAGCGGCTGGGAAAGCAGAACGCC
CGCTTCCTCACGTCCATGCGGCGCCTCAGCAGCATCAAGCGCGACACCAACTCCATCGCCAAGGCCATCA
AGGCCCGGGGCGAGGTCATCCACTGCAAGCTGCGCGCCATGAAGGAGCTGAGCGAGGCGGCTGAGGCCCA
GCACGGCCCGCACTCGGCAGTGGCGCGCATTTCGCGGGCGCAGTACAACGCGCTCACCCTCACCTTCCAG
CGCGCCATGCACGACTACAACCAGGCCGAGATGAAGCAGCGCGACAACTGCAAGATCCGCATCCAGCGCC
AGCTGGAGATCATGGGCAAGGAAGTCTCGGGCGACCAGATCGAGGACATGTTCGAGCAGGGTAAGTGGGA
CGTGTTTTCCGAGAACTTGCTGGCCGACGTGAAGGGCGCGCGGGCCGCCCTCAACGAGATCGAGAGCCGC
CACCGCGAACTGCTGCGCCTGGAGAGCCGCATCCGCGACGTACACGAGCTCTTCTTGCAGATGGCGGTGC
TGGTGGAGAAGCAGGCCGACACCCTGAACGTCATCGAGCTCAACGTACAAAAGACGGTCGACTACACCGG
CCAGGCCAAGGCGCAGGTGCGGAAGGCCGTGCAGTACGAGGAGAAGAACCCCTGCCGGACCCTCTGCTGC
TTCTGCTGTCCCTGCCTCAAGTAG

Translation (287 aa):
MKDRLAELLDLSKQYDQQFPDGDDEFDSPHEDIVFETDHILESLYRDIRDIQDENQLLVADVKRLGKQNA
RFLTSMRRLSSIKRDTNSIAKAIKARGEVIHCKLRAMKELSEAAEAQHGPHSAVARISRAQYNALTLTFQ
RAMHDYNQAEMKQRDNCKIRIQRQLEIMGKEVSGDQIEDMFEQGKWDVFSENLLADVKGARAALNEIESR
HRELLRLESRIRDVHELFLQMAVLVEKQADTLNVIELNVQKTVDYTGQAKAQVRKAVQYEEKNPCRTLCC
FCCPCLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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