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Report for CCDS52088.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52088.1 Public Mus musculus 7 Vmn1r120 23 108 98 CCDS HistoryNCBI Gene:435953Re-query CCDS DB by CCDS ID:52088.1Re-query CCDS DB by GeneID:435953See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52088.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105202.2 ENSMUSP00000100837.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105202.2Link to Ensembl Protein Viewer:ENSMUSP00000100837.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105202Re-query CCDS DB by Protein ID:ENSMUSP00000100837
Original member Current member NCBI NM_001166715.1 NP_001160187.1 Accepted alive Link to Nucleotide Sequence:NM_001166715.1Link to Protein Sequence:NP_001160187.1Re-query CCDS DB by Nucleotide ID:NM_001166715Re-query CCDS DB by Protein ID:NP_001160187Link to BLAST:NP_001160187.1

Chromosomal Locations for CCDS 52088.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 21052867 21053784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGTCTGATCATGCTAAATCCCTGAAAAGCACTGAGGAAGTGGCTCTTCAGCTCCTCTTGCTTTGCCAGT
TTGGGGTTGGGACCTTGGCCAATGTCTTTCTGTTTGTCCATAATTTCTATCCAGTCTTGACTGGTTCTAA
ACAGAGACCCAGAAAGGTGATTTTAAGCCACATGGCTGTGGCCAATGCCTTGACTATATTCCTCACTATA
TTTCCAAACAACATGATAGCTTTTGCTCCAAAAACTCCTCCAACTGAACTCAAATGTAAATTAGAATTCT
TCAGTCACATGGTGGCAAGAAACACAAACTTGTGTTCCACCTGTGTCCTGAGTATCCATCATTTTGTCAC
TCTTGTTCTTGTTAATAGAGGTAAACTTATACTCAGAGCTAGTGTCCCAAATTTTGTGAGTTATTCTTGT
TACAGTTGTTGGTTTTTCAGTGTCTTAAGTAACATCCACATTCCAATTAAGGTCACTGGTCCACAGATAA
CAGACAATAACACTGACTCTAAAAGCAACTTGTTCTGTTCCACTTCTGGATTCATTGGAGGCATTGTCTT
CTTGCAGTTTTCCTATGATGCCACATTCATGAGCATCATGGTCTGGACCAGTGTCTCCATGATACTTCTC
CTCCATAGACATCGCCAGCGAATGCAGCACATCCTCACTCCCAATCAGTACCGCAGAGGCCAAGCTGAGT
CCAGAGCAACCCATACTATTCTGATGCTGGTGGTCACATTTGTTAGCTTTTATCTTCTAAATTTTATTTG
TATCATCTTTCATACCCTTTTAATGCATTCTCATCTCTTCACAAGGCTTGTCAGTGAGGTTCTGGCTGCA
GTCTTCCCCAGTATCTCTCCCTTACTGTTGATCTTCAGAGATCCTAAAGATCCTTGTTCTGTGATCCTCA
ACTGTTGA

Translation (305 aa):
MSDHAKSLKSTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRKVILSHMAVANALTIFLTI
FPNNMIAFAPKTPPTELKCKLEFFSHMVARNTNLCSTCVLSIHHFVTLVLVNRGKLILRASVPNFVSYSC
YSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIGGIVFLQFSYDATFMSIMVWTSVSMILL
LHRHRQRMQHILTPNQYRRGQAESRATHTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFTRLVSEVLAA
VFPSISPLLLIFRDPKDPCSVILNC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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