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Report for CCDS5247.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5247.1 Public Homo sapiens 6 SCAF8 24 110 108 CCDS HistoryNCBI Gene:22828Re-query CCDS DB by CCDS ID:5247.1Re-query CCDS DB by GeneID:22828See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5247.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367178.8 ENSP00000356146.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367178.8Link to Ensembl Protein Viewer:ENSP00000356146.3Re-query CCDS DB by Nucleotide ID:ENST00000367178Re-query CCDS DB by Protein ID:ENSP00000356146
Original member Current member NCBI NM_001286199.2 NP_001273128.1 Accepted alive Link to Nucleotide Sequence:NM_001286199.2Link to Protein Sequence:NP_001273128.1Re-query CCDS DB by Nucleotide ID:NM_001286199Re-query CCDS DB by Protein ID:NP_001273128Link to BLAST:NP_001273128.1
Original member Current member NCBI NM_014892.5 NP_055707.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014892.5Link to Protein Sequence:NP_055707.3Re-query CCDS DB by Nucleotide ID:NM_014892Re-query CCDS DB by Protein ID:NP_055707Link to BLAST:NP_055707.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273128.1 1271 Q9UPN6-1 1271 100% 0 0
NP_055707.3 1271 Q9UPN6-1 1271 100% 0 0

Chromosomal Locations for CCDS 5247.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 154733901 154733930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154773989 154774072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154778001 154778045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154787861 154788022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154792823 154792976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154795009 154795139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154801971 154802147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154803544 154803623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154805369 154805486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154808070 154808201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154808686 154808798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154810015 154810208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154815716 154815816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154818479 154818592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154820177 154820333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154822276 154822409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154824234 154824378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154827172 154827240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154830922 154831140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 154831939 154833395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3816 nt):
ATGGAGGCCGTGAAGACCTTCAATAGCGAGTTGTATTCCCTGAATGACTATAAACCACCCATTTCGAAAG
CGAAAATGACCCAAATTACTAAGGCAGCCATCAAAGCTATTAAGTTCTATAAACATGTGGTACAGAGTGT
TGAGAAGTTTATTCAGAAATGTAAACCAGAATACAAAGTACCTGGACTTTATGTTATTGACTCCATTGTG
CGACAATCCCGACATCAGTTTGGTCAAGAAAAGGATGTGTTTGCACCCAGATTTAGTAATAACATCATTA
GCACTTTCCAGAATTTATATCGTTGCCCTGGGGATGACAAGAGTAAAATAGTGAGAGTACTAAACTTATG
GCAGAAGAATAATGTATTTAAGAGTGAGATTATTCAGCCCCTTTTGGATATGGCAGCCGGGATTCCGCCT
CCAGTTGTCACACCTGTTTTGGCCAGCACTACCACTGCTATGAGCAATACTCCAGGAACTCCTGTGACAC
CTGTTACTCCGGCCAATGTGGTCCAAGGCTTACCTGATCCGTGGGTATCTCAGATAACAAATACAGATAC
ACTTGCGGCTGTAGCTCAGATCTTGCAAAGTCCTCAAGGCCAGCAGCTTCAACAATTAATACAAACCTTA
CAGATACAACAACAGAAGCCCCAGCCTTCCATTCTGCAGGCCCTAGATGCTGGTCTTGTTGTTCAGTTGC
AAGCTCTTACGGCACAACTTACAGCTGCAGCTGCAGCTGCCAACACTCTTACTCCCTTAGAACAGGGAGT
CTCCTTTAACAAGAAGTTGATGGATAGGTTTGATTTTGGGGAAGACTCTGAGCATAGTGAAGAACCCAAA
AAGGAAATTCCAGCTTCACAACTTTCTCACGTTTCAGAATCTGTGAACAATTCCATTTTTCATCAGATAG
CAGAACAACTACAACAGCAAAACCTAGAACATCTCAGACAGCAGCTCTTGGAGCAGCAACAGCCTCAAAA
GGCCACTCCTCAGGATAGTCAGGAAGGAACCTTTGGGTCAGAGCATTCAGCGTCACCATCACAAGGGAGT
AGTCAGCAGCATTTTCTTGAACCTGAAGTCAATTTGGATGATTCCATAGATATTCAGCAACAGGATATGG
ATATAGATGAAGGGCAAGATGGAGTGGAAGAGGAGGTCTTTGAACAAGAAGCTAAGAAAGTGGCGGTTCG
CTCAAGATCAAGAACACATTCACGATCTCGTTCAAGATCACCAAGAAAACGAAGGTCTAGGTCACGGTCT
GGCTCTAGAAAGCGTAAACACAGAAAGCGATCACGCTCCCGCTCAAGAGAAAGAAAGAGGAAATCATCAC
GGTCGTATTCAAGTGAAAGGAGAGCCAGAGAAAGGGAGAAAGAACGACAGAAAAAGGGATTACCTCCAAT
TAGATCTAAAACACTAAGTGTATGTAGTACTACTCTCTGGGTTGGGCAAGTGGACAAGAAGGCAACACAG
CAAGACTTAACCAACCTGTTTGAAGAGTTTGGACAGATTGAATCCATTAATATGATTCCTCCCCGGGGCT
GTGCTTATGTCTGCATGGTTCATCGACAAGATGCATTTCGAGCTCTTCAGAAACTCAGTTCTGGATCATA
TAAAATTGGGTCCAAGGTCATTAAGATCGCTTGGGCTTTAAACAAAGGTGTAAAAACAGAATACAAACAA
TTCTGGGATGTGGATCTTGGAGTTACATATATACCATGGGAAAAAGTTAAAGTGGATGACTTGGAAGGTT
TTGCAGAAGGAGGCATGATTGATCAGGAGACTGTAAATACTGAGTGGGAAACTGTGAAAAGCTCAGAACC
TGTTAAAGAGACGGTCCAGACAACTCAGAGCCCAACTCCAGTTGAAAAGGAGACAGTGGTCACAACCCAG
GCAGAGGTTTTCCCTCCTCCTGTTGCTATGTTGCAGATTCCAGTGGCGCCAGCCGTGCCTACAGTTAGTT
TAGTCCCACCAGCATTTCCTGTGTCGATGCCGGTTCCTCCTCCTGGATTCAGTCCAATCCCTCCACCTCC
TTTTTTAAGAGCAAGTTTTAACCCTTCACAACCACCACCTGGTTTCATGCCGCCTCCAGTTCCCCCACCT
GTTGTGCCACCCCCTACGATTCCACCAGTAGTACCAACATCTTTAGTGCAGCCGTCATTATCCATGACAC
CGGAAACTGTGAAAGATGTTGGATTTGGTAGCCTTGTTATACCAGGCGGTTCTGTTGCCAGCAATCTTGC
TACTTCCGCTCTGCCAGCTGGAAATGTTTTTAATGCTCCAACTAAACAGGCAGAGCCTGAAGAAAAAGTA
CCTCATCTTATAGACCACCAGATTTCTTCTGGTGAAAACACCAGATCAGTGATTCCAAATGATATTTCAA
GTAATGCTGCAATTTTAGGAGGACAGCCGCCAAATGTGACAAGCAATTCTGGAATTCTGGGAGTCCAAAG
ACCAAATGTATCAAGTAATTCTGAAATTCTTGGGGTCCGGCCATCTAATGTTTCCAGTAGTTCTGGGATT
ATTGCAGCCCAACCACCAAATATTCTAAATAACTCTGGAATATTGGGAATACAGCCACCCAGTGTGTCAA
ATAGTTCTGGACTTTTGGGAGTGCTACCCCCAAATATACCTAACAATTCTGGACTTGTAGGAGTACAGCC
ACCAAATGTTCCAAATACTCCTGGACTTCTGGGAACACAGCCACCAGCTGGACCTCAAAACTTACCCCCT
TTAAGTATCCCTAATCAAAGGATGCCCACAATGCCAATGTTAGACATTCGTCCGGGACTAATACCACAGG
CACCTGGGCCAAGATTCCCTTTAATACAGCCTGGAATTCCACCCCAACGGGGAATCCCACCCCCATCGGT
ACTTGATTCAGCTCTTCATCCACCACCCCGTGGACCTTTTCCTCCAGGAGATATTTTTAGTCAACCAGAA
AGACCTTTTTTAGCTCCTGGAAGACAAAGCGTAGACAATGTTACTAACCCAGAAAAAAGGATACCACTTG
GGAATGATAACATTCAACAGGAAGGAGATAGAGATTACCGGTTTCCTCCTATAGAAACCAGGGAAAGCAT
TAGTAGACCTCCCCCTGTGGATGTTAGAGATGTGGTTGGGCGGCCTATAGATCCAAGAGAAGGTCCTGGA
CGGCCTCCACTAGATGGTAGGGATCATTTTGGAAGACCTCCTGTAGATATAAGAGAGAATCTTGTGAGGC
CAGGTATAGATCATCTTGGTCGAAGAGACCACTTTGGCTTTAATCCAGAGAAGCCCTGGGGGCATAGAGG
AGATTTTGATGAGAGAGAGCATCGGGTTCTACCGGTCTATGGTGGTCCAAAAGGCTTACATGAAGAAAGA
GGTAGATTTCGGTCTGGAAACTATCGATTTGATCCTAGAAGTGGTCCTTGGAACCGAGGATTTGGACAAG
AAGTTCACAGAGATTTTGATGACCGCAGAAGACCCTGGGAGAGGCAAAGGGATAGGGATGACAGAGATTT
TGATTTCTGCAGAGAAATGAATGGAAATCGTCTTGGACGAGACAGAATTCAAAACACTTGGGTTCCCCCT
CCTCATGCTCGGGTTTTTGATTATTTTGAAGGGGCCACTTCTCAACGAAAAGGTGATAATGTGCCTCAGG
TTAATGGTGAAAATACAGAGAGACATGCTCAGCCACCACCTATACCAGTACAGAATGATCCTGAACTTTA
TGAAAAACTGACATCTTCAAATGAAATAAACAAGGAGAAGAGTGACACAGTTGCTGATATAGAAAGTGAA
CCAGTGGTAGAAAGCACAGAAACTGAGGGGACATAA

Translation (1271 aa):
MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIV
RQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPP
PVVTPVLASTTTAMSNTPGTPVTPVTPANVVQGLPDPWVSQITNTDTLAAVAQILQSPQGQQLQQLIQTL
QIQQQKPQPSILQALDAGLVVQLQALTAQLTAAAAAANTLTPLEQGVSFNKKLMDRFDFGEDSEHSEEPK
KEIPASQLSHVSESVNNSIFHQIAEQLQQQNLEHLRQQLLEQQQPQKATPQDSQEGTFGSEHSASPSQGS
SQQHFLEPEVNLDDSIDIQQQDMDIDEGQDGVEEEVFEQEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRS
GSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQVDKKATQ
QDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKIGSKVIKIAWALNKGVKTEYKQ
FWDVDLGVTYIPWEKVKVDDLEGFAEGGMIDQETVNTEWETVKSSEPVKETVQTTQSPTPVEKETVVTTQ
AEVFPPPVAMLQIPVAPAVPTVSLVPPAFPVSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPPP
VVPPPTIPPVVPTSLVQPSLSMTPETVKDVGFGSLVIPGGSVASNLATSALPAGNVFNAPTKQAEPEEKV
PHLIDHQISSGENTRSVIPNDISSNAAILGGQPPNVTSNSGILGVQRPNVSSNSEILGVRPSNVSSSSGI
IAAQPPNILNNSGILGIQPPSVSNSSGLLGVLPPNIPNNSGLVGVQPPNVPNTPGLLGTQPPAGPQNLPP
LSIPNQRMPTMPMLDIRPGLIPQAPGPRFPLIQPGIPPQRGIPPPSVLDSALHPPPRGPFPPGDIFSQPE
RPFLAPGRQSVDNVTNPEKRIPLGNDNIQQEGDRDYRFPPIETRESISRPPPVDVRDVVGRPIDPREGPG
RPPLDGRDHFGRPPVDIRENLVRPGIDHLGRRDHFGFNPEKPWGHRGDFDEREHRVLPVYGGPKGLHEER
GRFRSGNYRFDPRSGPWNRGFGQEVHRDFDDRRRPWERQRDRDDRDFDFCREMNGNRLGRDRIQNTWVPP
PHARVFDYFEGATSQRKGDNVPQVNGENTERHAQPPPIPVQNDPELYEKLTSSNEINKEKSDTVADIESE
PVVESTETEGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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