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Report for CCDS5271.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5271.2 Public Homo sapiens 6 PNLDC1 24 110 108 CCDS HistoryNCBI Gene:154197Re-query CCDS DB by CCDS ID:5271.2Re-query CCDS DB by GeneID:154197See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 5271.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 5271.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392167.4 ENSP00000376007.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392167.4Link to Ensembl Protein Viewer:ENSP00000376007.3Re-query CCDS DB by Nucleotide ID:ENST00000392167Re-query CCDS DB by Protein ID:ENSP00000376007
Original member Current member NCBI NM_001271862.2 NP_001258791.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001271862.2Link to Protein Sequence:NP_001258791.1Re-query CCDS DB by Nucleotide ID:NM_001271862Re-query CCDS DB by Protein ID:NP_001258791Link to BLAST:NP_001258791.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258791.1 531 Q8NA58-2 531 100% 0 0

Chromosomal Locations for CCDS 5271.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 159800308 159800383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159800772 159800829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159801113 159801186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159803271 159803310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159803965 159804088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159804549 159804637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159805983 159806083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159808740 159808816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159809015 159809158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159810026 159810095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159811701 159811786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159813601 159813656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159815969 159816033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159816543 159816596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159817109 159817151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159818555 159818654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159818946 159819121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159819254 159819352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159820454 159820517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1596 nt):
ATGGACGTGGGCGCCGACGAGTTCGAGGAGAGCCTCCCTCTGCTGCAGGAGCTCGTCCAGGAGGCCGACT
TCGTGGGTCTGGACATAGAGTTCACGGGCCTTCGTTCTAACCTGTCTGGGCCCCAGCAGATCAGTCTTTT
TGATTTGCCATCGGAGTGGTATCTAAAGACCCGTCAGAGTGTTCAGCAATTTACAGTCTGTCAGATTGGA
TTGTCTGTGTTTTCCGCTATTGAAGGAGAGGCAAACAAGTATATAGCCCATTCTTGTAACTTCTATCTCT
TCCCTACAACGTTTGGGATTTTGGACTCAGAATTCTCCTTCCAGGCTTCCAGTGTTCAGTTTTTGAATCA
GTATGGCTTCAACTATAACAAGTTTCTCAAAAACGGAATCCCATATATGAATGAAGAACAGGAGAAGAAA
ATTAGACACGATATCCTGACTGGGAACTGGAGAGTTCGCAGCTCTCCGGATAAAGACCAAATCAAGGTGG
TGATTGACGAAGTGACGCGGTGGCTGGAGCTGGCCAAGGAAGGCGACTGGATGACTCTTCCTGGGATCAC
TGGCTTCCAGGCCTTTGAGGTCCAACTGGTGCTGAGGCAGGCCCTCCCCAACATCTGGACGGTGCTGAAA
GATGAGGGGGTGGTAGTGAAGAAAGTGAGTAAACAACATCGTTGGTATCTTCAGAACACCTCTTGTGACC
GAGAGAGCTGTTGGAAGGAAAATATTCTTCTCTCAGCAAGGGGTTTTTCTGTCTTTTTCCAAATGCTGGT
GAAAGCCCAGAAGCCCTTAGTGGGACATAATATGATGATGGACCTGCTGCACCTCCATGAGAAGTTCTTC
AGACCCCTCCCAGAAAGCTACGATCAATTTAAGCAGAATATCCACAGCCTATTTCCTGTTCTCATTGATA
CCAAGAGTGTAACAAAGGATATCTGGAAGGAGATGAATTTCCCGAGGGTGTCGAATCTTTCGGAAGTCTA
TGAAGTCCTGAACAGTGACTTGAATCCCACCAAGAATTCTGGACCAGAGATTGTTCACGCGAGCAGGTGT
GAGAAATATGTTGAGACAAAGTGCCCCCACGAAGCCGCGTATGATGCCTTCCTCTGTGGGTCAGTTCTTT
TGAAAGTGGCACACTTGCTTCTACAGAAGATATACCACATCGACCCCGTGCCCGAGTCATCCTTTCCTCA
GTACCTTGACGTGCTGGCTCCTTACGTGAACCAAGTGAACCTCATCCGAGCGGGGGTCCCAAAGATCAAT
TTTTCTGGTCCAGATTATCCCAGTATCCGACCTCCCATCCTCATCCTCAGCGTCAAAAGGTGGCCTGGGG
TCAGCGAGCAGCAAGTCTACCATAAGTTTCAGAATCTCTGCAAGTTTGATGTCAGGCGACTCACAAGAAG
CCAGTTCTTACTCCTGACCAATAAGTTTAAGGATGCGCGGAACATCCTGAAGGAGTACCGGGACCACCCG
ACCCTGTGCATCTCCCTGTACCGCTACTGGAGGCACTCCCCAAACGTCAACTGCCTGCTCCAAGTCTGTG
GCATAGTGACTGCCTGGGCCCTTCTCGCGTTCATCCTTGGAAGATCTGGTACCTGA

Translation (531 aa):
MDVGADEFEESLPLLQELVQEADFVGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQSVQQFTVCQIG
LSVFSAIEGEANKYIAHSCNFYLFPTTFGILDSEFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKK
IRHDILTGNWRVRSSPDKDQIKVVIDEVTRWLELAKEGDWMTLPGITGFQAFEVQLVLRQALPNIWTVLK
DEGVVVKKVSKQHRWYLQNTSCDRESCWKENILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFF
RPLPESYDQFKQNIHSLFPVLIDTKSVTKDIWKEMNFPRVSNLSEVYEVLNSDLNPTKNSGPEIVHASRC
EKYVETKCPHEAAYDAFLCGSVLLKVAHLLLQKIYHIDPVPESSFPQYLDVLAPYVNQVNLIRAGVPKIN
FSGPDYPSIRPPILILSVKRWPGVSEQQVYHKFQNLCKFDVRRLTRSQFLLLTNKFKDARNILKEYRDHP
TLCISLYRYWRHSPNVNCLLQVCGIVTAWALLAFILGRSGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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