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Report for CCDS5306.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5306.1 Public Homo sapiens 6 FRMD1 24 110 108 CCDS HistoryNCBI Gene:79981Re-query CCDS DB by CCDS ID:5306.1Re-query CCDS DB by GeneID:79981See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5306.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000283309.11 ENSP00000283309.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000283309.11Link to Ensembl Protein Viewer:ENSP00000283309.6Re-query CCDS DB by Nucleotide ID:ENST00000283309Re-query CCDS DB by Protein ID:ENSP00000283309
Original member Current member NCBI NM_024919.6 NP_079195.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024919.6Link to Protein Sequence:NP_079195.3Re-query CCDS DB by Nucleotide ID:NM_024919Re-query CCDS DB by Protein ID:NP_079195Link to BLAST:NP_079195.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079195.3 549 Q8N878-1 549 100% 0 0

Chromosomal Locations for CCDS 5306.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 168057097 168057339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 168059124 168059188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 168060761 168061057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 168061807 168061981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 168062894 168062959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 168063601 168063756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 168064871 168065057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 168066755 168066831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 168067367 168067446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 168075245 168075335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 168078882 168079094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1650 nt):
ATGGCGGTGCCCCCGAGAGGGAGGGGCATAGACCCCGCCCGGACAAACCCTGACACGTTCCCTCCTTCAG
GGGCGCGATGTATGGAACCCAGTCCTGAGAGGCCTGCATGCAGTCAGCAGGAGCCGACCCTGGGAATGGA
CGCGATGGCCTCGGAACACAGGGATGTCCTCGTGCTGCTGCCCAGCCGGGAGCAACTGCGGCTGGCCGTG
GGGGTGAAGGCTACTGGCCGCGAGCTTTTCCAGCAAGTGTGCAACGTGGCGAGCATCAGAGACGCGCAGT
TCTTTGGCCTCTGTGTGGTCAGAAACAATGAGTATATATTTATGGATTTGGAGCAAAAGCTCAGCAAGTA
CTTCTCAAAAGATTGGAAGAAAGAAAGAAATGAAGGAAATGAGAAACCCAGAGCCCCCTTCGTGGCCTTC
CTCCGAGTGCAGCACTACGTGGAAAACGGAAGGGTCATAAGCGACCACAGGGCACGGCACCTGTACTACT
GCCACTTGAAGGAGCGCGTGCTGAGGTCACAGTGCGCTCACCGGGAGGAAGCCTACTTCCTGCTGGCTGC
CTGCGCGCTGCAGGCTGACCTGGGCGAGCACCGGGAGTCGGCCCATGCCGGGAGGTACTTCGAGCCACAC
TCCTACTTCCCACAGTGGATCATCACCAAGAGGGGGATTGACTACATCCTCCGGCACATGCCTACCCTGC
ACCGTGAGCGCCAGGGCCTGAGCCCCAAGGAGGCCATGCTGTGCTTCATCCAGGAGGCCTGCCGGCTGGA
GGACGTGCCCGTGCACTTCTTCAGGCTGCACAAGGATAAGAAGGAAGGTCGTCCCACCGTGATCCTGGGA
CTGGCCCTCAGGGGAGTGCACATCTACCAGGGAAAGAAGCTGGAGATCCAGCTGGATGGGCTGCCCGCAG
CACAGAAGCTGGTTTACTACACGGGGTGCACCTGGCGGTCCAGGCACCTGCTGCACCTGCTGCGCGCCAG
CCACCAGCTCCACCTCCGCGTGCGGCCCACTCTGCAACAGCTGCGGCAGCGGGAGGAGGCAGAAGAGAAG
CAGCACTACCGGGAGTCCTATATCAGCGATGAGCTGGAGCTGGACCTGGCCAGCAGGAGCTTCCCGGGCA
GTGGGGTCAGCAGCCAGCACTGCCCCCACTGCCTCTCACGCCACTCCGCCGACAGCCACGGCAGTTCCTA
CACGTCAGGCATCAAGGCCAACTCCTGGCTCAGGGAATCCAGAGAGATGTCTGTGGACGTGCCCTTGGAG
GTCCACGGGCTCCATGAGAAGGAGCCGTCCTCCAGCCCCAGGACCAGCCGCAGCCACCCCAGCACACGTG
GTGACAGCCAAGCCACTCGTCAGGAGCCCTGCACCCAGGTCAGGACCAGAGGCCAGAGCGCCGAGGCCGT
GCACCAGATCCAGGAAATGACAGCCGGGGTCAGTGAGGAGCAGCACAGCCATGGCCTGGACGACATGCAG
CTGCACCAGCTGGCCCTGCACCCAGCGCCCACCTCACTCAGCCATACCTTCCACCGCGCCCTGGACTGCA
GGCTGGCAGGCCCCTGCGAGACCAGGGCCACTCTCCCCAGCAAGAGGTCCAGCAACTGTCTCGCCCTGGA
CCTGTTCGGAGAGGCTCCACCACAGGAGTTTGTGGTGTAG

Translation (549 aa):
MAVPPRGRGIDPARTNPDTFPPSGARCMEPSPERPACSQQEPTLGMDAMASEHRDVLVLLPSREQLRLAV
GVKATGRELFQQVCNVASIRDAQFFGLCVVRNNEYIFMDLEQKLSKYFSKDWKKERNEGNEKPRAPFVAF
LRVQHYVENGRVISDHRARHLYYCHLKERVLRSQCAHREEAYFLLAACALQADLGEHRESAHAGRYFEPH
SYFPQWIITKRGIDYILRHMPTLHRERQGLSPKEAMLCFIQEACRLEDVPVHFFRLHKDKKEGRPTVILG
LALRGVHIYQGKKLEIQLDGLPAAQKLVYYTGCTWRSRHLLHLLRASHQLHLRVRPTLQQLRQREEAEEK
QHYRESYISDELELDLASRSFPGSGVSSQHCPHCLSRHSADSHGSSYTSGIKANSWLRESREMSVDVPLE
VHGLHEKEPSSSPRTSRSHPSTRGDSQATRQEPCTQVRTRGQSAEAVHQIQEMTAGVSEEQHSHGLDDMQ
LHQLALHPAPTSLSHTFHRALDCRLAGPCETRATLPSKRSSNCLALDLFGEAPPQEFVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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