NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5319.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5319.2 Public Homo sapiens 7 CYP2W1 24 110 108 CCDS HistoryNCBI Gene:54905Re-query CCDS DB by CCDS ID:5319.2Re-query CCDS DB by GeneID:54905See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 5319.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308919.12 ENSP00000310149.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000308919.12Link to Ensembl Protein Viewer:ENSP00000310149.7Re-query CCDS DB by Nucleotide ID:ENST00000308919Re-query CCDS DB by Protein ID:ENSP00000310149
Original member Current member NCBI NM_017781.3 NP_060251.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017781.3Link to Protein Sequence:NP_060251.2Re-query CCDS DB by Nucleotide ID:NM_017781Re-query CCDS DB by Protein ID:NP_060251Link to BLAST:NP_060251.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060251.2 490 Q8TAV3 490 100% 0 0

Chromosomal Locations for CCDS 5319.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 983212 983385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 984412 984574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 984950 985099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 985166 985323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 986624 986797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 987107 987245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 987347 987531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 988277 988418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 988635 988822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGGCCCTGCTGCTCTTGCTGTTCCTGGGCCTCCTGGGGCTCTGGGGGCTGCTCTGCGCCTGCGCCCAAG
ACCCCTCCCCAGCTGCCCGGTGGCCCCCGGGGCCTCGCCCGCTGCCGCTCGTCGGGAACCTGCACTTGCT
GCGTCTGTCGCAACAGGACCGGTCCCTGATGGAGCTCTCAGAACGCTACGGGCCGGTGTTCACCGTGCAC
CTGGGGCGCCAGAAGACGGTGGTGCTGACGGGGTTCGAGGCGGTCAAAGAGGCGCTGGCGGGCCCCGGGC
AGGAGCTGGCCGACCGGCCTCCCATCGCCATCTTCCAGCTCATCCAGCGAGGTGGAGGCATCTTCTTCTC
ATCTGGGGCGCGCTGGAGGGCTGCCCGCCAGTTCACGGTGCGTGCCCTGCACAGCCTGGGCGTGGGCCGG
GAGCCGGTGGCTGACAAGATTCTGCAGGAGCTGAAATGCCTCTCTGGGCAGCTGGATGGCTACAGAGGCC
GGCCCTTCCCGCTGGCCCTACTGGGCTGGGCTCCCTCCAATATCACCTTCGCGCTCCTCTTCGGCCGCCG
ATTTGACTACCGGGACCCCGTGTTTGTGTCCCTGCTGGGTCTCATCGATGAGGTCATGGTCCTCTTGGGG
TCCCCTGGCCTGCAGCTGTTCAACGTCTACCCATGGCTCGGGGCCCTGCTCCAGCTGCACCGGCCCGTCC
TGCGCAAGATCGAGGAGGTCCGTGCCATTCTGAGGACCCTCCTGGAGGCGCGGAGGCCCCACGTGTGCCC
GGGGGACCCCGTGTGCAGCTATGTGGACGCCCTGATCCAGCAGGGACAGGGGGATGACCCCGAGGGCCTG
TTTGCTGAGGCCAACGCGGTGGCCTGCACCCTGGACATGGTCATGGCCGGGACGGAGACGACCTCGGCCA
CGCTGCAGTGGGCCGCACTTCTGATGGGCCGGCACCCGGACGTGCAGGGCCGGGTGCAGGAGGAGCTAGA
CCGCGTGCTGGGCCCTGGGCGGACTCCCCGGCTGGAGGACCAGCAGGCTCTGCCCTACACAAGCGCCGTG
CTCCACGAGGTGCAGCGGTTCATCACGCTCCTGCCGCACGTGCCCCGCTGCACCGCGGCCGACACACAGC
TGGGCGGCTTCCTGCTCCCCAAGGGCACGCCCGTGATTCCCCTGCTGACCTCGGTGCTCCTGGATGAGAC
ACAGTGGCAGACCCCAGGCCAGTTCAACCCCGGCCATTTCCTGGACGCGAATGGGCACTTTGTGAAGCGG
GAGGCCTTCCTGCCTTTCTCTGCAGGCCGCCGCGTCTGTGTTGGGGAGCGCCTGGCCAGGACCGAGCTCT
TCCTGCTGTTTGCCGGCCTCCTGCAGAGGTACCGCCTGCTGCCCCCGCCTGGCGTCAGTCCGGCCTCCCT
GGACACCACGCCCGCCCGGGCTTTTACCATGAGGCCGAGGGCCCAGGCCCTGTGTGCGGTGCCCAGGCCC
TAG

Translation (490 aa):
MALLLLLFLGLLGLWGLLCACAQDPSPAARWPPGPRPLPLVGNLHLLRLSQQDRSLMELSERYGPVFTVH
LGRQKTVVLTGFEAVKEALAGPGQELADRPPIAIFQLIQRGGGIFFSSGARWRAARQFTVRALHSLGVGR
EPVADKILQELKCLSGQLDGYRGRPFPLALLGWAPSNITFALLFGRRFDYRDPVFVSLLGLIDEVMVLLG
SPGLQLFNVYPWLGALLQLHRPVLRKIEEVRAILRTLLEARRPHVCPGDPVCSYVDALIQQGQGDDPEGL
FAEANAVACTLDMVMAGTETTSATLQWAALLMGRHPDVQGRVQEELDRVLGPGRTPRLEDQQALPYTSAV
LHEVQRFITLLPHVPRCTAADTQLGGFLLPKGTPVIPLLTSVLLDETQWQTPGQFNPGHFLDANGHFVKR
EAFLPFSAGRRVCVGERLARTELFLLFAGLLQRYRLLPPPGVSPASLDTTPARAFTMRPRAQALCAVPRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH