NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5320.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5320.1 Public Homo sapiens 7 C7orf50 24 110 108 CCDS HistoryNCBI Gene:84310Re-query CCDS DB by CCDS ID:5320.1Re-query CCDS DB by GeneID:84310See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5320.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357429.10 ENSP00000350011.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357429.10Link to Ensembl Protein Viewer:ENSP00000350011.5Re-query CCDS DB by Nucleotide ID:ENST00000357429Re-query CCDS DB by Protein ID:ENSP00000350011
Original member Current member EBI ENST00000397098.8 ENSP00000380286.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397098.8Link to Ensembl Protein Viewer:ENSP00000380286.3Re-query CCDS DB by Nucleotide ID:ENST00000397098Re-query CCDS DB by Protein ID:ENSP00000380286
Original member Current member EBI ENST00000397100.6 ENSP00000380288.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397100.6Link to Ensembl Protein Viewer:ENSP00000380288.2Re-query CCDS DB by Nucleotide ID:ENST00000397100Re-query CCDS DB by Protein ID:ENSP00000380288
Original member Current member NCBI NM_001134395.1 NP_001127867.1 Accepted alive Link to Nucleotide Sequence:NM_001134395.1Link to Protein Sequence:NP_001127867.1Re-query CCDS DB by Nucleotide ID:NM_001134395Re-query CCDS DB by Protein ID:NP_001127867Link to BLAST:NP_001127867.1
Original member Current member NCBI NM_001134396.1 NP_001127868.1 Accepted alive Link to Nucleotide Sequence:NM_001134396.1Link to Protein Sequence:NP_001127868.1Re-query CCDS DB by Nucleotide ID:NM_001134396Re-query CCDS DB by Protein ID:NP_001127868Link to BLAST:NP_001127868.1
Original member Current member NCBI NM_001318252.2 NP_001305181.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001318252.2Link to Protein Sequence:NP_001305181.1Re-query CCDS DB by Nucleotide ID:NM_001318252Re-query CCDS DB by Protein ID:NP_001305181Link to BLAST:NP_001305181.1
Original member Current member NCBI NM_032350.5 NP_115726.1 Accepted alive Link to Nucleotide Sequence:NM_032350.5Link to Protein Sequence:NP_115726.1Re-query CCDS DB by Nucleotide ID:NM_032350Re-query CCDS DB by Protein ID:NP_115726Link to BLAST:NP_115726.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127867.1 194 Q9BRJ6 194 100% 0 0
NP_001127868.1 194 Q9BRJ6 194 100% 0 0
NP_001305181.1 194 Q9BRJ6 194 100% 0 0
NP_115726.1 194 Q9BRJ6 194 100% 0 0

Chromosomal Locations for CCDS 5320.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 997625 997804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 1000470 1000551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 1009950 1010143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 1127257 1127385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGGCAAAACAGAAGAGAAAAGTTCCTGAAGTGACAGAGAAAAAGAACAAAAAGCTGAAGAAGGCGTCAG
CAGAGGGGCCACTGCTGGGCCCTGAGGCTGCACCAAGTGGCGAAGGAGCCGGCTCCAAGGGCGAAGCTGT
GCTCAGGCCCGGGCTGGACGCAGAGCCAGAGCTGTCCCCAGAGGAGCAGAGGGTCCTGGAAAGGAAGCTG
AAAAAGGAACGGAAGAAAGAGGAGAGGCAGCGTCTGCGGGAGGCAGGCCTTGTGGCCCAGCACCCGCCTG
CCAGGCGCTCGGGGGCCGAACTGGCCCTGGACTACCTCTGCAGATGGGCCCAAAAGCACAAGAACTGGAG
GTTTCAGAAGACGAGGCAGACGTGGCTCCTGCTGCACATGTATGACAGTGACAAGGTTCCCGATGAGCAC
TTCTCCACCCTGCTGGCCTACCTGGAGGGGCTGCAGGGCCGGGCCCGAGAGCTGACGGTGCAGAAGGCGG
AAGCCCTGATGCGGGAGCTGGATGAGGAGGGCTCTGATCCCCCCCTGCCGGGGAGGGCCCAGCGCATCCG
ACAGGTGCTGCAGCTGCTCTCCTAG

Translation (194 aa):
MAKQKRKVPEVTEKKNKKLKKASAEGPLLGPEAAPSGEGAGSKGEAVLRPGLDAEPELSPEEQRVLERKL
KKERKKEERQRLREAGLVAQHPPARRSGAELALDYLCRWAQKHKNWRFQKTRQTWLLLHMYDSDKVPDEH
FSTLLAYLEGLQGRARELTVQKAEALMRELDEEGSDPPLPGRAQRIRQVLQLLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH