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Report for CCDS53243.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53243.1 Public Mus musculus X Gpm6b 23 108 98 CCDS HistoryNCBI Gene:14758Re-query CCDS DB by CCDS ID:53243.1Re-query CCDS DB by GeneID:14758See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53243.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112233.7 ENSMUSP00000107852.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112233.7Link to Ensembl Protein Viewer:ENSMUSP00000107852.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112233Re-query CCDS DB by Protein ID:ENSMUSP00000107852
Original member Current member EBI ENSMUST00000112235.7 ENSMUSP00000107854.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112235.7Link to Ensembl Protein Viewer:ENSMUSP00000107854.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112235Re-query CCDS DB by Protein ID:ENSMUSP00000107854
Original member NCBI NM_001177961.1 NP_001171432.1 Updated not alive Link to Nucleotide Sequence:NM_001177961.1Link to Protein Sequence:NP_001171432.1Re-query CCDS DB by Nucleotide ID:NM_001177961Re-query CCDS DB by Protein ID:NP_001171432
Current member NCBI NM_001177961.2 NP_001171432.1 Accepted alive Link to Nucleotide Sequence:NM_001177961.2Link to Protein Sequence:NP_001171432.1Re-query CCDS DB by Nucleotide ID:NM_001177961Re-query CCDS DB by Protein ID:NP_001171432Link to BLAST:NP_001171432.1
Original member NCBI NM_001177962.1 NP_001171433.1 Updated not alive Link to Nucleotide Sequence:NM_001177962.1Link to Protein Sequence:NP_001171433.1Re-query CCDS DB by Nucleotide ID:NM_001177962Re-query CCDS DB by Protein ID:NP_001171433
Current member NCBI NM_001177962.2 NP_001171433.1 Accepted alive Link to Nucleotide Sequence:NM_001177962.2Link to Protein Sequence:NP_001171433.1Re-query CCDS DB by Nucleotide ID:NM_001177962Re-query CCDS DB by Protein ID:NP_001171433Link to BLAST:NP_001171433.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171432.1 246 P35803-5 246 100% 0 0
NP_001171433.1 246 P35803-5 246 100% 0 0

Chromosomal Locations for CCDS 53243.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 166239133 166239136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166372638 166372824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166375633 166375789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166379988 166380159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166382449 166382522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166383935 166384000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166385391 166385471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGGGTTGCTTCGAATGCTGCATCAAGTGTCTGGGAGGAGTTCCCTATGCCTCCCTGGTGGCCACCATCC
TATGTTTCTCTGGAGTGGCCTTGTTCTGTGGCTGTGGGCATGTGGCTCTTGCAGGCACCGTGGCAATTCT
TGAGCAACACTTCTCCACCAACACCAGTGACCATGCCTTGCTGAGTGAAGTGATCCAACTGATGCAGTAT
GTTATCTATGGAATCGCCTCCTTTTTCTTCCTGTATGGCATCATTCTTCTGGCAGAAGGCTTCTACACCA
CAAGTGCAGTGAAAGAGCTGCACGGTGAGTTTAAAACAACTGCCTGTGGCCGATGCATCAGTGGAATGTT
CGTGTTCCTCACCTATGTGCTGGGAGTGGCCTGGCTGGGTGTGTTCGGCTTTTCCGCAGTGCCAGTGTTT
ATGTTCTACAACATCTGGTCAACCTGTGAAGTCATCAAGTCCCCACAAAGCAACGGGACCTCGGGTGTGG
AGCAGATCTGTGTGGATGTCCGGCAATATGGTATCATTCCTTGGAATGCTTTCCCAGGCAAAATCTGTGG
CTCGGCCTTGGAGAACATCTGCAACACGAATGAGTTCTACATGTCCTATCACCTGTTCATTGTGGCTTGT
GCTGGAGCTGGTGCCACCGTCATTGCCCTGCTGATCTACATGATGGCTACTACATATAACTATGCGGTTT
TGAAGTTTAAGAGTCGGGAAGACTGCTGCACTAAGTTCTAA

Translation (246 aa):
MGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALLSEVIQLMQY
VIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLTYVLGVAWLGVFGFSAVPVF
MFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHLFIVAC
AGAGATVIALLIYMMATTYNYAVLKFKSREDCCTKF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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