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Report for CCDS53244.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53244.1 Public Mus musculus X Gpm6b 23 108 98 CCDS HistoryNCBI Gene:14758Re-query CCDS DB by CCDS ID:53244.1Re-query CCDS DB by GeneID:14758See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53244.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112223.7 ENSMUSP00000107842.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112223.7Link to Ensembl Protein Viewer:ENSMUSP00000107842.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112223Re-query CCDS DB by Protein ID:ENSMUSP00000107842
Original member Current member EBI ENSMUST00000112227.8 ENSMUSP00000107846.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112227.8Link to Ensembl Protein Viewer:ENSMUSP00000107846.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112227Re-query CCDS DB by Protein ID:ENSMUSP00000107846
Original member NCBI NM_001177956.1 NP_001171427.1 Updated not alive Link to Nucleotide Sequence:NM_001177956.1Link to Protein Sequence:NP_001171427.1Re-query CCDS DB by Nucleotide ID:NM_001177956Re-query CCDS DB by Protein ID:NP_001171427
Current member NCBI NM_001177956.2 NP_001171427.1 Accepted alive Link to Nucleotide Sequence:NM_001177956.2Link to Protein Sequence:NP_001171427.1Re-query CCDS DB by Nucleotide ID:NM_001177956Re-query CCDS DB by Protein ID:NP_001171427Link to BLAST:NP_001171427.1
Original member NCBI NM_001177957.1 NP_001171428.1 Updated not alive Link to Nucleotide Sequence:NM_001177957.1Link to Protein Sequence:NP_001171428.1Re-query CCDS DB by Nucleotide ID:NM_001177957Re-query CCDS DB by Protein ID:NP_001171428
Current member NCBI NM_001177957.2 NP_001171428.1 Accepted alive Link to Nucleotide Sequence:NM_001177957.2Link to Protein Sequence:NP_001171428.1Re-query CCDS DB by Nucleotide ID:NM_001177957Re-query CCDS DB by Protein ID:NP_001171428Link to BLAST:NP_001171428.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171427.1 305 P35803-2 305 99.6721% 0 1
NP_001171428.1 305 P35803-2 305 99.6721% 0 1

Chromosomal Locations for CCDS 53244.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 166345021 166345081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166353565 166353684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166372638 166372824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166375633 166375789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166379988 166380159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166382449 166382522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166383935 166384000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166385391 166385471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGAAGCCAGCCATGGAAACTGCAGCCGAGGAAAATACTGAACAAAGCCAAGAGAGAAAAGTGAACAGCA
GAGCTGAAATGGAAATTGGCAGGTACCACTGGATGTACCCAGGCTCAAAGAACCATCAGTACCGTCCTGT
GCCAACCCTGGGGGACAGGGCTGGCCCCTTGAGCAGTCCAGGTTGCTTCGAATGCTGCATCAAGTGTCTG
GGAGGAGTTCCCTATGCCTCCCTGGTGGCCACCATCCTATGTTTCTCTGGAGTGGCCTTGTTCTGTGGCT
GTGGGCATGTGGCTCTTGCAGGCACCGTGGCAATTCTTGAGCAACACTTCTCCACCAACACCAGTGACCA
TGCCTTGCTGAGTGAAGTGATCCAACTGATGCAGTATGTTATCTATGGAATCGCCTCCTTTTTCTTCCTG
TATGGCATCATTCTTCTGGCAGAAGGCTTCTACACCACAAGTGCAGTGAAAGAGCTGCACGGTGAGTTTA
AAACAACTGCCTGTGGCCGATGCATCAGTGGAATGTTCGTGTTCCTCACCTATGTGCTGGGAGTGGCCTG
GCTGGGTGTGTTCGGCTTTTCCGCAGTGCCAGTGTTTATGTTCTACAACATCTGGTCAACCTGTGAAGTC
ATCAAGTCCCCACAAAGCAACGGGACCTCGGGTGTGGAGCAGATCTGTGTGGATGTCCGGCAATATGGTA
TCATTCCTTGGAATGCTTTCCCAGGCAAAATCTGTGGCTCGGCCTTGGAGAACATCTGCAACACGAATGA
GTTCTACATGTCCTATCACCTGTTCATTGTGGCTTGTGCTGGAGCTGGTGCCACCGTCATTGCCCTGCTG
ATCTACATGATGGCTACTACATATAACTATGCGGTTTTGAAGTTTAAGAGTCGGGAAGACTGCTGCACTA
AGTTCTAA

Translation (305 aa):
MKPAMETAAEENTEQSQERKVNSRAEMEIGRYHWMYPGSKNHQYRPVPTLGDRAGPLSSPGCFECCIKCL
GGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALLSEVIQLMQYVIYGIASFFFL
YGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEV
IKSPQSNGTSGVEQICVDVRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALL
IYMMATTYNYAVLKFKSREDCCTKF


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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