NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS53245.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53245.1 Public Mus musculus X Gpm6b 23 108 98 CCDS HistoryNCBI Gene:14758Re-query CCDS DB by CCDS ID:53245.1Re-query CCDS DB by GeneID:14758See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53245.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112229.8 ENSMUSP00000107848.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112229.8Link to Ensembl Protein Viewer:ENSMUSP00000107848.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112229Re-query CCDS DB by Protein ID:ENSMUSP00000107848
Original member NCBI NM_001177955.1 NP_001171426.1 Updated not alive Link to Nucleotide Sequence:NM_001177955.1Link to Protein Sequence:NP_001171426.1Re-query CCDS DB by Nucleotide ID:NM_001177955Re-query CCDS DB by Protein ID:NP_001171426
Current member NCBI NM_001177955.2 NP_001171426.1 Accepted alive Link to Nucleotide Sequence:NM_001177955.2Link to Protein Sequence:NP_001171426.1Re-query CCDS DB by Nucleotide ID:NM_001177955Re-query CCDS DB by Protein ID:NP_001171426Link to BLAST:NP_001171426.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171426.1 328 P35803-1 328 99.6951% 0 1

Chromosomal Locations for CCDS 53245.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 166345021 166345081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166353565 166353684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166372638 166372824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166375633 166375789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166379988 166380159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166382449 166382522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166383935 166384000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166386952 166387101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGAAGCCAGCCATGGAAACTGCAGCCGAGGAAAATACTGAACAAAGCCAAGAGAGAAAAGTGAACAGCA
GAGCTGAAATGGAAATTGGCAGGTACCACTGGATGTACCCAGGCTCAAAGAACCATCAGTACCGTCCTGT
GCCAACCCTGGGGGACAGGGCTGGCCCCTTGAGCAGTCCAGGTTGCTTCGAATGCTGCATCAAGTGTCTG
GGAGGAGTTCCCTATGCCTCCCTGGTGGCCACCATCCTATGTTTCTCTGGAGTGGCCTTGTTCTGTGGCT
GTGGGCATGTGGCTCTTGCAGGCACCGTGGCAATTCTTGAGCAACACTTCTCCACCAACACCAGTGACCA
TGCCTTGCTGAGTGAAGTGATCCAACTGATGCAGTATGTTATCTATGGAATCGCCTCCTTTTTCTTCCTG
TATGGCATCATTCTTCTGGCAGAAGGCTTCTACACCACAAGTGCAGTGAAAGAGCTGCACGGTGAGTTTA
AAACAACTGCCTGTGGCCGATGCATCAGTGGAATGTTCGTGTTCCTCACCTATGTGCTGGGAGTGGCCTG
GCTGGGTGTGTTCGGCTTTTCCGCAGTGCCAGTGTTTATGTTCTACAACATCTGGTCAACCTGTGAAGTC
ATCAAGTCCCCACAAAGCAACGGGACCTCGGGTGTGGAGCAGATCTGTGTGGATGTCCGGCAATATGGTA
TCATTCCTTGGAATGCTTTCCCAGGCAAAATCTGTGGCTCGGCCTTGGAGAACATCTGCAACACGAATGA
GTTCTACATGTCCTATCACCTGTTCATTGTGGCTTGTGCTGGAGCTGGTGCCACCGTCATTGCCCTGATC
CACTTCCTCATGATACTGTCTTCTAACTGGGCTTACTTAAAGGATGCAAGCAAAATGCAGGCTTACCAGG
ATATCAAAGCAAAGGAAGAGCAGGAACTGCAAGATATCCAGTCTCGCTCAAAAGAACAACTCAATTCTTA
CACTTAA

Translation (328 aa):
MKPAMETAAEENTEQSQERKVNSRAEMEIGRYHWMYPGSKNHQYRPVPTLGDRAGPLSSPGCFECCIKCL
GGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNTSDHALLSEVIQLMQYVIYGIASFFFL
YGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEV
IKSPQSNGTSGVEQICVDVRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALI
HFLMILSSNWAYLKDASKMQAYQDIKAKEEQELQDIQSRSKEQLNSYT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH