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Report for CCDS53246.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53246.1 Public Mus musculus X Gpm6b 23 108 98 CCDS HistoryNCBI Gene:14758Re-query CCDS DB by CCDS ID:53246.1Re-query CCDS DB by GeneID:14758See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53246.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112224.7 ENSMUSP00000107843.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112224.7Link to Ensembl Protein Viewer:ENSMUSP00000107843.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112224Re-query CCDS DB by Protein ID:ENSMUSP00000107843
Original member Current member EBI ENSMUST00000112226.2 ENSMUSP00000107845.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112226.2Link to Ensembl Protein Viewer:ENSMUSP00000107845.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112226Re-query CCDS DB by Protein ID:ENSMUSP00000107845
Original member NCBI NM_001177959.1 NP_001171430.1 Updated not alive Link to Nucleotide Sequence:NM_001177959.1Link to Protein Sequence:NP_001171430.1Re-query CCDS DB by Nucleotide ID:NM_001177959Re-query CCDS DB by Protein ID:NP_001171430
Current member NCBI NM_001177959.2 NP_001171430.1 Accepted alive Link to Nucleotide Sequence:NM_001177959.2Link to Protein Sequence:NP_001171430.1Re-query CCDS DB by Nucleotide ID:NM_001177959Re-query CCDS DB by Protein ID:NP_001171430Link to BLAST:NP_001171430.1
Original member NCBI NM_001177960.1 NP_001171431.1 Updated not alive Link to Nucleotide Sequence:NM_001177960.1Link to Protein Sequence:NP_001171431.1Re-query CCDS DB by Nucleotide ID:NM_001177960Re-query CCDS DB by Protein ID:NP_001171431
Current member NCBI NM_001177960.2 NP_001171431.1 Accepted alive Link to Nucleotide Sequence:NM_001177960.2Link to Protein Sequence:NP_001171431.1Re-query CCDS DB by Nucleotide ID:NM_001177960Re-query CCDS DB by Protein ID:NP_001171431Link to BLAST:NP_001171431.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171430.1 265 P35803-4 265 100% 0 0
NP_001171431.1 265 P35803-4 265 100% 0 0

Chromosomal Locations for CCDS 53246.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 166345021 166345081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166372638 166372824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166375633 166375789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166379988 166380159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166382449 166382522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166383935 166384000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 166385391 166385471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (798 nt):
ATGAAGCCAGCCATGGAAACTGCAGCCGAGGAAAATACTGAACAAAGCCAAGAGAGAAAAGGTTGCTTCG
AATGCTGCATCAAGTGTCTGGGAGGAGTTCCCTATGCCTCCCTGGTGGCCACCATCCTATGTTTCTCTGG
AGTGGCCTTGTTCTGTGGCTGTGGGCATGTGGCTCTTGCAGGCACCGTGGCAATTCTTGAGCAACACTTC
TCCACCAACACCAGTGACCATGCCTTGCTGAGTGAAGTGATCCAACTGATGCAGTATGTTATCTATGGAA
TCGCCTCCTTTTTCTTCCTGTATGGCATCATTCTTCTGGCAGAAGGCTTCTACACCACAAGTGCAGTGAA
AGAGCTGCACGGTGAGTTTAAAACAACTGCCTGTGGCCGATGCATCAGTGGAATGTTCGTGTTCCTCACC
TATGTGCTGGGAGTGGCCTGGCTGGGTGTGTTCGGCTTTTCCGCAGTGCCAGTGTTTATGTTCTACAACA
TCTGGTCAACCTGTGAAGTCATCAAGTCCCCACAAAGCAACGGGACCTCGGGTGTGGAGCAGATCTGTGT
GGATGTCCGGCAATATGGTATCATTCCTTGGAATGCTTTCCCAGGCAAAATCTGTGGCTCGGCCTTGGAG
AACATCTGCAACACGAATGAGTTCTACATGTCCTATCACCTGTTCATTGTGGCTTGTGCTGGAGCTGGTG
CCACCGTCATTGCCCTGCTGATCTACATGATGGCTACTACATATAACTATGCGGTTTTGAAGTTTAAGAG
TCGGGAAGACTGCTGCACTAAGTTCTAA

Translation (265 aa):
MKPAMETAAEENTEQSQERKGCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF
STNTSDHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQSNGTSGVEQICVDVRQYGIIPWNAFPGKICGSALE
NICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSREDCCTKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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