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Report for CCDS53286.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53286.1 Public Homo sapiens 1 SYTL1 24 110 108 CCDS HistoryNCBI Gene:84958Re-query CCDS DB by CCDS ID:53286.1Re-query CCDS DB by GeneID:84958See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53286.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000543823.1 ENSP00000440704.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543823.1Link to Ensembl Protein Viewer:ENSP00000440704.1Re-query CCDS DB by Nucleotide ID:ENST00000543823Re-query CCDS DB by Protein ID:ENSP00000440704
Original member Current member EBI ENST00000616558.5 ENSP00000481032.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000616558.5Link to Ensembl Protein Viewer:ENSP00000481032.1Re-query CCDS DB by Nucleotide ID:ENST00000616558Re-query CCDS DB by Protein ID:ENSP00000481032
Original member Current member NCBI NM_001193308.2 NP_001180237.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001193308.2Link to Protein Sequence:NP_001180237.1Re-query CCDS DB by Nucleotide ID:NM_001193308Re-query CCDS DB by Protein ID:NP_001180237Link to BLAST:NP_001180237.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180237.1 562 Q8IYJ3-1 562 100% 0 0

Chromosomal Locations for CCDS 53286.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 27345335 27345525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27347421 27347569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27347808 27347880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27347967 27348012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27349080 27349152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27349398 27349498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27349652 27349765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27349972 27350132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27350389 27350485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27350794 27350952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27351258 27351336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27351456 27351555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27353283 27353488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27353713 27353852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1689 nt):
ATGCCCCAGAGGGGCCACCCATCGCAAGAGGGGCTTTGGGCTCTGCCCTCCCTCCCCATGGCGCATGGGC
CAAAGCCTGAGACTGAAGGACTGTTGGACCTCAGCTTCCTGACAGAGGAGGAGCAGGAGGCCATTGCTGG
CGTCCTCCAACGAGATGCCCGCCTGCGCCAGCTGGAGGAGGGGCGGGTCAGCAAGCTCCGGGCCTCAGTG
GCAGACCCTGGGCAGCTGAAGATCCTGACAGGGGACTGGTTCCAGGAAGCACGCTCCCAGCGGCACCACA
ATGCCCACTTCGGCTCTGACCTTGTCCGAGCGTCTATGCGCAGGAAGAAGAGCACCAGGGGAGACCAGGC
TCCAGGCCACGACAGGGAGGCTGAGGCTGCTGTGAAAGAGAAGGAAGAGGGGCCAGAGCCCAGGCTCACC
ATTGATGAGGCCCCTCAGGAGAGGCTCAGGGAGACTGAGGGACCTGATTTCCCATCGCCTTCTGTCCCCC
TAAAGGCTTCAGATCCTGAGGAGGCGTCCCAGGCCCAGGAAGATCCTGGCCAAGGAGACCAACAGGTCTG
TGCCGAGGAGGCTGACCCGGAGCTGGAGCCCGCGTCGGGGGGAGAGCAGGAGCCGCGGCCCCAGCAAGCC
CAGACCAAGGCCGCGTCCCAGATCCTGGAGAATGGGGAGGAGGCCCCGGGGCCCGACCCCTCTCTCGACC
GCATGCTCAGCAGCAGCTCCTCGGTGTCCAGCCTTAACTCCTCCACGCTGAGCGGCAGCCAGATGAGCCT
GTCAGGCGACGCGGAGGCGGTGCAGGTCCGCGGCTCCGTGCACTTCGCGCTGCACTACGAGCCGGGCGCC
GCCGAGCTGCGCGTGCACGTGATCCAGTGCCAGGGCCTGGCCGCCGCCCGGCGCCGCCGCTCGGACCCCT
ACGTCAAAAGCTACCTCCTCCCGGATAAGCAGAGCAAGCGCAAGACGGCGGTGAAGAAACGGAATCTGAA
TCCGGTTTTCAACGAGACTCTCCGGTACTCCGTCCCGCAGGCCGAGCTTCAGGGCCGCGTGCTGAGCCTG
TCTGTGTGGCACCGCGAAAGCCTGGGTCGCAACATCTTTCTGGGCGAAGTTGAAGTGCCCCTGGACACGT
GGGACTGGGGCTCTGAGCCCACCTGGCTCCCCCTGCAGCCCCGGGTCCCACCCTCTCCCGACGACCTTCC
GAGCCGCGGGTTACTCGCCCTGTCCCTCAAGTACGTCCCCGCCGGCTCCGAGGGCGCAGGACTGCCCCCG
AGCGGGGAGCTGCACTTCTGGGTGAAGGAGGCTCGGGACCTCCTGCCGCTGCGGGCAGGATCCCTGGACA
CTTACGTACAATGCTTCGTGCTGCCTGATGACAGCCAGGCCAGCCGCCAGCGTACAAGGGTTGTGCGACG
CAGCCTCAGCCCTGTGTTCAATCACACCATGGTGTACGATGGCTTTGGGCCTGCTGACCTGCGCCAGGCT
TGTGCCGAGCTCTCCCTCTGGGACCATGGGGCCCTGGCCAACCGCCAGCTGGGGGGCACACGCCTCAGCC
TGGGCACCGGCAGCAGCTATGGGCTGCAGGTGCCCTGGATGGATTCCACACCTGAGGAGAAGCAGCTGTG
GCAAGCCCTCCTGGAGCAGCCGTGCGAATGGGTGGATGGCCTTCTACCCCTCAGAACCAACCTGGCCCCC
AGGACGTAG

Translation (562 aa):
MPQRGHPSQEGLWALPSLPMAHGPKPETEGLLDLSFLTEEEQEAIAGVLQRDARLRQLEEGRVSKLRASV
ADPGQLKILTGDWFQEARSQRHHNAHFGSDLVRASMRRKKSTRGDQAPGHDREAEAAVKEKEEGPEPRLT
IDEAPQERLRETEGPDFPSPSVPLKASDPEEASQAQEDPGQGDQQVCAEEADPELEPASGGEQEPRPQQA
QTKAASQILENGEEAPGPDPSLDRMLSSSSSVSSLNSSTLSGSQMSLSGDAEAVQVRGSVHFALHYEPGA
AELRVHVIQCQGLAAARRRRSDPYVKSYLLPDKQSKRKTAVKKRNLNPVFNETLRYSVPQAELQGRVLSL
SVWHRESLGRNIFLGEVEVPLDTWDWGSEPTWLPLQPRVPPSPDDLPSRGLLALSLKYVPAGSEGAGLPP
SGELHFWVKEARDLLPLRAGSLDTYVQCFVLPDDSQASRQRTRVVRRSLSPVFNHTMVYDGFGPADLRQA
CAELSLWDHGALANRQLGGTRLSLGTGSSYGLQVPWMDSTPEEKQLWQALLEQPCEWVDGLLPLRTNLAP
RT


Links Key
 Links to:   History report
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  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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