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Report for CCDS53303.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53303.1 Public Homo sapiens 1 SCMH1 24 110 108 CCDS HistoryNCBI Gene:22955Re-query CCDS DB by CCDS ID:53303.1Re-query CCDS DB by GeneID:22955See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53303.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000456518.3 ENSP00000403974.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000456518.3Link to Ensembl Protein Viewer:ENSP00000403974.2Re-query CCDS DB by Nucleotide ID:ENST00000456518Re-query CCDS DB by Protein ID:ENSP00000403974
Original member Current member NCBI NM_001172222.3 NP_001165693.1 Accepted alive Link to Nucleotide Sequence:NM_001172222.3Link to Protein Sequence:NP_001165693.1Re-query CCDS DB by Nucleotide ID:NM_001172222Re-query CCDS DB by Protein ID:NP_001165693Link to BLAST:NP_001165693.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165693.1 480 Q96GD3-6 480 100% 0 0

Chromosomal Locations for CCDS 53303.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 41028194 41028319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41028584 41028726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41037362 41037541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41046407 41046598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41048690 41048890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41070595 41070721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41075219 41075451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41142878 41143112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41159725 41159730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGCAGTCCTACACACCTCCAAGCAACGAGTTCAAGATCAGTATGAAATTGGAAGCACAGGACCCCAGGA
ACACCACATCCACCTGTATTGCCACAGTAGTTGGACTGACAGGTGCCCGCCTTCGCCTGCGCCTTGATGG
GAGCGACAACAAAAATGACTTCTGGCGGCTGGTTGACTCAGCTGAAATCCAGCCTATTGGGAACTGTGAA
AAGAATGGGGGTATGCTACAGCCACCTCTTGTTGTGATTCCAAAGAATCCCTATCCTGCCTCCGATGTGA
ATACTGAGAAGCCCAGCATCCACAGCAGCACCAAAACTGTCTTGGAACATCAACCAGGGCAGAGGGGGCG
TAAACCAGGAAAGAAGCGGGGCCGGACACCCAAGACCCTAATTTCCCATCCCATCTCTGCCCCATCCAAG
ACAGCTGAACCTTTGAAATTCCCAAAGAAGAGAGGTCCCAAACCTGGCAGCAAGAGGAAACCTCGGACTT
TGCTGAACCCACCACCTGCCTCACCAACAACCAGCACTCCTGAACCGGATACCAGCACTGTACCCCAGGA
TGCTGCCACCATCCCCAGCTCAGCCATGCAGGCCCCAACAGTTTGTATCTACTTGAACAAGAATGGCAGC
ACAGGCCCCCACTTAGATAAGAAGAAGGTCCAGCAACTCCCTGACCATTTTGGACCAGCCCGTGCCTCTG
TGGTGTTGCAGCAGGCTGTCCAGGCCTGTATCGACTGTGCTTATCACCAGAAAACCGTCTTCAGCTTCCT
CAAGCAAGGCCATGGTGGTGAGGTTATCTCAGCCGTGTTTGACCGGGAACAGCATACCCTCAACCTCCCA
GCAGTCAACAGCATCACCTACGTCCTCCGCTTCCTGGAGAAACTCTGCCACAACCTTCGTAGTGACAATC
TGTTTGGCAACCAGCCCTTTACACAGACTCACTTGTCACTCACTGCCATAGAGTACAGCCACAGCCACGA
CAGGTACCTACCAGGTGAAACCTTTGTCCTGGGGAATAGTCTGGCCCGCTCCTTGGAACCACACTCAGAC
TCAATGGACTCTGCCTCAAATCCCACCAACCTTGTCAGCACCTCCCAAAGGCACCGGCCCTTGCTTTCAT
CCTGTGGCCTCCCACCAAGCACTGCCTCAGCTGTGCGCAGGCTATGCTCCAGGGGGTCGGACCGATACCT
GGAGAGCCGCGATGCCTCTCGACTGAGTGGCCGGGACCCCTCCTCATGGACAGTCGAGGATGTGATGCAG
TTTGTCCGGGAAGCTGATCCTCAGCTTGGACCCCACGCTGACCTGTTTCGCAAACACGAGATCGATGGCA
AGGCCCTGCTGCTGCTGCGCAGTGACATGATGATGAAGTACATGGGCCTGAAGCTGGGGCCTGCACTCAA
GCTCTCCTACCACATTGACCGGCTGAAGCAGGGCAAGTTCTGA

Translation (480 aa):
MQSYTPPSNEFKISMKLEAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFWRLVDSAEIQPIGNCE
KNGGMLQPPLVVIPKNPYPASDVNTEKPSIHSSTKTVLEHQPGQRGRKPGKKRGRTPKTLISHPISAPSK
TAEPLKFPKKRGPKPGSKRKPRTLLNPPPASPTTSTPEPDTSTVPQDAATIPSSAMQAPTVCIYLNKNGS
TGPHLDKKKVQQLPDHFGPARASVVLQQAVQACIDCAYHQKTVFSFLKQGHGGEVISAVFDREQHTLNLP
AVNSITYVLRFLEKLCHNLRSDNLFGNQPFTQTHLSLTAIEYSHSHDRYLPGETFVLGNSLARSLEPHSD
SMDSASNPTNLVSTSQRHRPLLSSCGLPPSTASAVRRLCSRGSDRYLESRDASRLSGRDPSSWTVEDVMQ
FVREADPQLGPHADLFRKHEIDGKALLLLRSDMMMKYMGLKLGPALKLSYHIDRLKQGKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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