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Report for CCDS53381.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53381.1 Public Homo sapiens 1 SH2D2A 24 110 108 CCDS HistoryNCBI Gene:9047Re-query CCDS DB by CCDS ID:53381.1Re-query CCDS DB by GeneID:9047See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53381.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392306.2 ENSP00000376123.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392306.2Link to Ensembl Protein Viewer:ENSP00000376123.2Re-query CCDS DB by Nucleotide ID:ENST00000392306Re-query CCDS DB by Protein ID:ENSP00000376123
Original member Current member NCBI NM_001161441.2 NP_001154913.1 Accepted alive Link to Nucleotide Sequence:NM_001161441.2Link to Protein Sequence:NP_001154913.1Re-query CCDS DB by Nucleotide ID:NM_001161441Re-query CCDS DB by Protein ID:NP_001154913Link to BLAST:NP_001154913.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001154913.1 399 Q9NP31-2 399 100% 0 0

Chromosomal Locations for CCDS 53381.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 156807178 156807345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156809203 156809490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156809661 156809807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156813848 156814016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156814205 156814324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156815037 156815221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156816006 156816094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156816675 156816708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGGAGTTCCCCCTGGCCCAGATATGTCCCCAAGGGAGTCACGAAGCCCCCATCCCAACCTTCAGCACCT
TCCAGATCACAGACATGACCCGCAGGAGCTGCCAGAACCTGGGCTACACTGCGGCATCTCCCCAGGCCCC
GGAGGCTGCCTCCAACACAGGGAATGCTGAGAGGGCAGAGGAGGTGCCTGGAGAAGGAAGCCTGTTCCTG
CAGGCCGAGACCCGGGCTTGGTTCCAGAAGACCCAGGCCCACTGGCTCCTGCAGCACGGGGCAGCCCCTG
CCTGGTTCCATGGCTTCATCACCCGGAGGGTTCGGCCCCCTCTCTCCGTCACCCACAGGGAGGCAGAGAG
GCTGCTGGAGCCCAAGCCTCAGGGGTGCTACTTGGTGCGGTTCAGCGAGAGCGCGGTGACCTTCGTGCTG
ACTTACAGGAGCCGGACTTGCTGCCGCCACTTCCTGCTGGCCCAGCTCAGGGACGGGCGCCACGTGGTGC
TGGGCGAGGACAGCGCCCACGCGCGGCTGCAGGACCTGCTGCTGCACTACACCGCGCACCCGCTCAGCCC
CTACGGGGAGACGCTCACCGAGCCCCTCGCCCGACAGACTCCTGAGCCTGCAGGACTTTCCCTGAGGACC
GAAGAATCAAACTTTGGAAGCAAAAGCCAGGACCCAAACCCCCAGTACAGCCCAATCATCAAACAGGGGC
AAGCCCCAGTCCCGATGCAGAAAGAGGGGGCCGGGGAGAAGGAGCCCTCCCAGCTGCTCAGGCCCAAGCC
TCCCATCCCCGCCAAACCTCAGCTGCCCCCAGAAGTCTACACAATCCCTGTTCCACGACACCGCCCGGCC
CCACGCCCCAAGCCCTCCAATCCTATCTACAATGAGCCTGATGAACCCATAGCTTTCTATGCCATGGGCC
GGGGCAGCCCTGGGGAAGCCCCCAGCAACATCTATGTGGAAGTGGAAGATGAGGGCCTACCCGCCACCCT
TGGGCACCCTGTCCTACGGAAGAGCTGGTCCAGGCCTGTCCCAGGAGGCCAGAATACAGGTGGCTCCCAG
CTGCATTCTGAGAACTCTGTGATTGGGCAAGGCCCTCCCCTGCCCCACCAGCCCCCACCCGCCTGGAGAC
ACACCCTCCCCCACAATCTTTCTAGACAGGTGCTTCAGGACAGAGGACAGGCATGGCTTCCCCTTGGGCC
TCCTCAGTAG

Translation (399 aa):
MEFPLAQICPQGSHEAPIPTFSTFQITDMTRRSCQNLGYTAASPQAPEAASNTGNAERAEEVPGEGSLFL
QAETRAWFQKTQAHWLLQHGAAPAWFHGFITRRVRPPLSVTHREAERLLEPKPQGCYLVRFSESAVTFVL
TYRSRTCCRHFLLAQLRDGRHVVLGEDSAHARLQDLLLHYTAHPLSPYGETLTEPLARQTPEPAGLSLRT
EESNFGSKSQDPNPQYSPIIKQGQAPVPMQKEGAGEKEPSQLLRPKPPIPAKPQLPPEVYTIPVPRHRPA
PRPKPSNPIYNEPDEPIAFYAMGRGSPGEAPSNIYVEVEDEGLPATLGHPVLRKSWSRPVPGGQNTGGSQ
LHSENSVIGQGPPLPHQPPPAWRHTLPHNLSRQVLQDRGQAWLPLGPPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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