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Report for CCDS53412.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53412.1 Public Homo sapiens 1 PCP4L1 24 110 108 CCDS HistoryNCBI Gene:654790Re-query CCDS DB by CCDS ID:53412.1Re-query CCDS DB by GeneID:654790See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53412.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000504449.2 ENSP00000426296.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000504449.2Link to Ensembl Protein Viewer:ENSP00000426296.1Re-query CCDS DB by Nucleotide ID:ENST00000504449Re-query CCDS DB by Protein ID:ENSP00000426296
Original member Current member NCBI NM_001102566.2 NP_001096036.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001102566.2Link to Protein Sequence:NP_001096036.1Re-query CCDS DB by Nucleotide ID:NM_001102566Re-query CCDS DB by Protein ID:NP_001096036Link to BLAST:NP_001096036.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001096036.1 68 A6NKN8 68 100% 0 0

Chromosomal Locations for CCDS 53412.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 161258975 161258983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161283668 161283722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161284339 161284481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (207 nt):
ATGAGCGAGCTTAATACCAAAACATCCCCAGCAACCAACCAGGCAGCTGGCCAAGAGGAAAAAGGAAAAG
CTGGCAATGTCAAGAAGGCGGAGGAGGAGGAGGAGATTGACATTGATCTGACAGCACCAGAAACAGAGAA
GGCTGCCCTTGCTATTCAGGGCAAGTTCCGGCGATTTCAGAAAAGGAAAAAGGATCCCAGCTCCTGA

Translation (68 aa):
MSELNTKTSPATNQAAGQEEKGKAGNVKKAEEEEEIDIDLTAPETEKAALAIQGKFRRFQKRKKDPSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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