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Report for CCDS53439.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53439.1 Public Homo sapiens 1 TOR1AIP2 24 110 108 CCDS HistoryNCBI Gene:163590Re-query CCDS DB by CCDS ID:53439.1Re-query CCDS DB by GeneID:163590See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 53439.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000482587.5 ENSP00000485355.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000482587.5Link to Ensembl Protein Viewer:ENSP00000485355.1Re-query CCDS DB by Nucleotide ID:ENST00000482587Re-query CCDS DB by Protein ID:ENSP00000485355
Original member Current member NCBI NM_001349931.2 NP_001336860.1 Accepted alive Link to Nucleotide Sequence:NM_001349931.2Link to Protein Sequence:NP_001336860.1Re-query CCDS DB by Nucleotide ID:NM_001349931Re-query CCDS DB by Protein ID:NP_001336860Link to BLAST:NP_001336860.1
Original member Current member NCBI NM_001349933.1 NP_001336862.1 Accepted alive Link to Nucleotide Sequence:NM_001349933.1Link to Protein Sequence:NP_001336862.1Re-query CCDS DB by Nucleotide ID:NM_001349933Re-query CCDS DB by Protein ID:NP_001336862Link to BLAST:NP_001336862.1
Original member Current member NCBI NM_022347.5 NP_071742.1 Accepted alive Link to Nucleotide Sequence:NM_022347.5Link to Protein Sequence:NP_071742.1Re-query CCDS DB by Nucleotide ID:NM_022347Re-query CCDS DB by Protein ID:NP_071742Link to BLAST:NP_071742.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001336860.1 131 Q9H496-1 131 100% 0 0
NP_001336862.1 131 Q9H496-1 131 100% 0 0
NP_071742.1 131 Q9H496-1 131 100% 0 0

Chromosomal Locations for CCDS 53439.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 179864781 179865176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (396 nt):
ATGTTTTCAGATAATTCACATTGCCCTGATTGTGGACAACAGTGGTTCCCTAGTTTAGAACTAGGCCACT
GGTTGTACCAAACTGAACTTGTTGAAAATGAATGTTACCAGGTATTCTTAGACCGTATTAACAGAGCTGA
TTATTGTCCTGAGTGTTATCCTGATAATCCTGCTAATAGAAGCCTTGTTCTTCCTTGGTCTTTCCCACTT
GAGTGGGCTCCCCAGAATCTCACCAGATGGACCTTTGAGAAAGCTTGCCATCCATTTCTTCTGGGTCCTC
CACTGGTTAGAAAAAGAATACATGACTCTCGAGTAGCTGGTTTTAACCCTGCATTACAGTTAATCTTGAC
CAGAACAGATAAAACCTTAAACAAAAAACTGGGCCAAAACAAATAG

Translation (131 aa):
MFSDNSHCPDCGQQWFPSLELGHWLYQTELVENECYQVFLDRINRADYCPECYPDNPANRSLVLPWSFPL
EWAPQNLTRWTFEKACHPFLLGPPLVRKRIHDSRVAGFNPALQLILTRTDKTLNKKLGQNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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