NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS53470.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53470.1 Public Homo sapiens 1 SYT14 24 110 108 CCDS HistoryNCBI Gene:255928Re-query CCDS DB by CCDS ID:53470.1Re-query CCDS DB by GeneID:255928See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53470.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367019.6 ENSP00000355986.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367019.6Link to Ensembl Protein Viewer:ENSP00000355986.1Re-query CCDS DB by Nucleotide ID:ENST00000367019Re-query CCDS DB by Protein ID:ENSP00000355986
Original member Current member NCBI NM_001146262.4 NP_001139734.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001146262.4Link to Protein Sequence:NP_001139734.1Re-query CCDS DB by Nucleotide ID:NM_001146262Re-query CCDS DB by Protein ID:NP_001139734Link to BLAST:NP_001139734.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139734.1 574 Q8NB59-6 574 100% 0 0

Chromosomal Locations for CCDS 53470.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 209938265 209938277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209952709 209952756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210013633 210013797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210021039 210021254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210094322 210094593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210100012 210100461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210155721 210155910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210159421 210159477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 210160729 210161042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1725 nt):
ATGGCGATTGAAGGTGGAGAGAGAACCTGTGGAGTACATGAACTTATCTGTATTAGAAAAGTATCTCCAG
AGGCAGTTGGATTTTTGTCAGCTGTTGGGGTGTTTATTATCTTGATGCTGCTCCTTTTTCTCTATATTAA
TAAGAAGTTCTGTTTTGAAAATGTTGGCGGGTTTCCAGATCTTGGTTCAGAATACAGTACAAGGAAGAAT
TCACAAGATAAAATTTATAATTCCTACATGGACAAAGATGAGCATGGTTCATCCTCTGAAAGTGAAGATG
AAGCGCTGGGTAAATATCATGAGGCCTTATCCAGAACACACAATTCCAGACTACCACTGGCAGATTCTAG
ACAAAGGAACTATGCTTGGGAAACAAGGCAGAAATACAGTCCTCTATCGGCAGAGTATGATGGATACAGT
AGTGAAGCATCAATAGATGAAGGAAACTGCATTCAGAGAATGAGAAGAACACCCCCGCTGGATGAATTGC
AGCCACCACCATATCAGGATGACAGTGGTTCTCCCCATCTGTCATGTACACCCTCAGAAATTGGGGACAG
TAAATGTGAATTTTCCCACTGCAGCAACAGTCCAAGATGCTCATATAACAAGTGCCCAAGTGAAGGAAGC
ACAGGTCATGAAATAGAAAGTTTTCATAATAAAGGATATGAAGAAGATGTTCCAAGTGACAGCACTGCAG
TCCTGAGCCCTGAAGATATGTCAGCTCAAGGATCATCTTCGCAGCTTCCTAAACCTTTTGATCCTGAGCC
AGAAGCTAAATATGGCACACTGGATGTGACTTTTGACTATGACTCACAAGAACAGAAGCTTCTGGTAACA
GTGACAGCTGTCACAGACATCCCAACATATAACAGGACAGGTGGCAACTCATGGCAAGTACACCTTGTTC
TTCTACCTATAAAGAAACAGAGAGCAAAAACCAGCATCCAGAGAGGACCATGCCCTGTCTTCACAGAAAC
ATTTAAATTTAATCATGTTGAATCTGAGATGATTGGAAATTATGCAGTTCGGTTTAGACTGTATGGTGTA
CATCGCATGAAAAAAGAAAAGATTGTGGGGGAAAAGATTTTTTATTTAACAAAATTGAATCTTCAAGGGA
AAATGTCATTGCCTGTGATATTGGAACCTTCTTACAATCATTCTGGCTGTGACTCCCAAATGAGCGTGTC
AGAAATGTCGTGTAGTGAAAGTACATCCTCATGTCAGTCTCTTGAACATGGCTCAGTTCCAGAAATTCTT
ATTGGCCTGCTTTATAATGCCACAACTGGAAGACTATCAGCAGAAGTGATAAAAGGCAGCCACTTCAAAA
ATTTGGCAGCAAACAGACCACCCAATGGACTGTTCTGTTGTCTAAAACACTTGATAGGTGGACAGGTTTA
TATAATCCGAGATACATATGTTAAGTTAACTCTACTGAATTCCATGGGTCAAGAGATGTCCAAATGCAAG
ACATCCATCCGCAGAGGGCAGCCAAATCCAGTATATAAGGAAACTTTTGTCTTTCAAGTGGCCCTATTTC
AGCTTTCTGATGTGACACTCATACTGTCTGTGTATAACAAACGCAGCATGAAAAGAAAAGAGATGATAGG
CTGGATTTCTTTAGGTCTCAACAGCTCTGGAGAAGAAGAACTCAATCACTGGACTGAAATGAAAGAGTCA
AAAGGACAGCAAGTATGTAGATGGCATGCGTTGCTAGAGTCATGA

Translation (574 aa):
MAIEGGERTCGVHELICIRKVSPEAVGFLSAVGVFIILMLLLFLYINKKFCFENVGGFPDLGSEYSTRKN
SQDKIYNSYMDKDEHGSSSESEDEALGKYHEALSRTHNSRLPLADSRQRNYAWETRQKYSPLSAEYDGYS
SEASIDEGNCIQRMRRTPPLDELQPPPYQDDSGSPHLSCTPSEIGDSKCEFSHCSNSPRCSYNKCPSEGS
TGHEIESFHNKGYEEDVPSDSTAVLSPEDMSAQGSSSQLPKPFDPEPEAKYGTLDVTFDYDSQEQKLLVT
VTAVTDIPTYNRTGGNSWQVHLVLLPIKKQRAKTSIQRGPCPVFTETFKFNHVESEMIGNYAVRFRLYGV
HRMKKEKIVGEKIFYLTKLNLQGKMSLPVILEPSYNHSGCDSQMSVSEMSCSESTSSCQSLEHGSVPEIL
IGLLYNATTGRLSAEVIKGSHFKNLAANRPPNGLFCCLKHLIGGQVYIIRDTYVKLTLLNSMGQEMSKCK
TSIRRGQPNPVYKETFVFQVALFQLSDVTLILSVYNKRSMKRKEMIGWISLGLNSSGEEELNHWTEMKES
KGQQVCRWHALLES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH