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Report for CCDS53538.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53538.1 Public Homo sapiens 10 FAM13C 24 110 108 CCDS HistoryNCBI Gene:220965Re-query CCDS DB by CCDS ID:53538.1Re-query CCDS DB by GeneID:220965See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53538.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000618427.4 ENSP00000480677.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618427.4Link to Ensembl Protein Viewer:ENSP00000480677.1Re-query CCDS DB by Nucleotide ID:ENST00000618427Re-query CCDS DB by Protein ID:ENSP00000480677
Original member Current member NCBI NM_001166698.2 NP_001160170.1 Accepted alive Link to Nucleotide Sequence:NM_001166698.2Link to Protein Sequence:NP_001160170.1Re-query CCDS DB by Nucleotide ID:NM_001166698Re-query CCDS DB by Protein ID:NP_001160170Link to BLAST:NP_001160170.1
Original member Current member NCBI NM_001347842.2 NP_001334771.1 Accepted alive Link to Nucleotide Sequence:NM_001347842.2Link to Protein Sequence:NP_001334771.1Re-query CCDS DB by Nucleotide ID:NM_001347842Re-query CCDS DB by Protein ID:NP_001334771Link to BLAST:NP_001334771.1
Original member Current member NCBI NM_001347844.1 NP_001334773.1 Accepted alive Link to Nucleotide Sequence:NM_001347844.1Link to Protein Sequence:NP_001334773.1Re-query CCDS DB by Nucleotide ID:NM_001347844Re-query CCDS DB by Protein ID:NP_001334773Link to BLAST:NP_001334773.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001160170.1 501 Q8NE31-5 501 100% 0 0
NP_001334771.1 501 Q8NE31-5 501 100% 0 0
NP_001334773.1 501 Q8NE31-5 501 100% 0 0

Chromosomal Locations for CCDS 53538.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 59247614 59247737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59251575 59251676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59252799 59252995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59254348 59254443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59262434 59262645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59264085 59264166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59268553 59268691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59269899 59270109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59283363 59283447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59302801 59302864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59323988 59324106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59352270 59352344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGGGCAACTTCAAGTCCAGGAAGCCCAAGTCCATCTTCAAAGCGGAGAGCGGGAGGAGCCACGGAGAAA
GTCAGGAGACAGAGCATGTGGTATCCAGCCAGTCAGAGTGTCAGGTGAGAGCAGGAACACCAGCTCATGA
GAGTCCACAAAACAATGCCTTCAAGTGCCAAGAAACAGTGCGACTTCAACCAAGAATAGACCAGAGGACT
GCCATTTCGCCAAAGGATGCTTTTGAAACTCGGCAGGACTTAAATGAGGAAGAAGCTGCTCAGGTGCATG
GAGTCAAGGACCCGGCGCCAGCATCAACCCAGAGCGTGCTTGCCGATGGGACAGATTCTGCAGACCCCTC
ACCAGTCCACAAAGATGGGCAGAATGAGGCCGACAGTGCACCAGAAGACCTCCACTCTGTGGGGACCAGC
AGGCTGCTCTATCACATCACTGATGGTGATAACCCACTGCTGTCGCCACGATGCTCCATCTTCAGCCAAA
GCCAGAGATTCAACTTAGACCCCGAGTCAGCCCCATCTCCACCCAGCACTCAGCAGTTTATGATGCCGCG
GAGTTCTTCACGCTGCAGCTGTGGAGATGGCAAGGAGCCACAGACCATCACCCAGCTCACCAAGCACATC
CAGAGCCTCAAGCGGAAAATTCGGAAATTTGAAGAAAAATTTGAACAAGAAAAGAAATACCGGCCTTCAC
ATGGTGACAAGACTTCTAATCCTGAAGTCCTGAAATGGATGAATGATTTGGCTAAAGGTCGTAAACAGCT
CAAAGAACTAAAGCTAAAGCTGTCAGAAGAACAAGGGAGTGCTCCCAAAGGTCCACCTAGAAACCTGTTG
TGTGAGCAACCCACAGTCCCCAGAGAAAATGGGAAACCGGAAGCTGCGGGCCCGGAGCCAAGCTCCTCTG
GAGAAGAGACTCCAGATGCTGCCTTGACATGCCTGAAGGAGAGAAGAGAGCAACTTCCTCCCCAGGAGGA
TTCTAAGGTAACTAAGCAAGACAAGAACCTCATAAAGCCGCTTTATGACCGATACAGAATTATCAAGCAA
ATCTTGTCAACACCTTCCCTTATTCCAACAATTGAGGAAGAGGACTCTGATGAAGACCGTCCACAGGGAA
GCCAACAACCTTCTTTGGCAGATCCAGCATCTCACCTTCCTGTTGGTGACCACCTCACCTACTCTAATGA
GACTGAGCCTGTTAGGGCCCTTTTACCAGATGAAAAGAAAGAAGTAAAACCACCAGCTCTCTCCATGTCT
AATTTACATGAGGCTACCATGCCTGTACTTCTTGACCATCTCCGAGAAACTAGGGCTGACAAGAAGAGAC
TGCGGAAAGCCTTAAGAGAATTTGAAGAACAGTTTTTTAAACAAACAGGAAGAAGTCCACAAAAGGAAGA
TAGGATACCAATGGCAGATGAGTATTATGAATATAAGCACATAAAAGCCAAACTGAGACTATTAGAGGTC
CTCATCAGCAAGCAAGATGTGGCCAAAACTATTTGA

Translation (501 aa):
MGNFKSRKPKSIFKAESGRSHGESQETEHVVSSQSECQVRAGTPAHESPQNNAFKCQETVRLQPRIDQRT
AISPKDAFETRQDLNEEEAAQVHGVKDPAPASTQSVLADGTDSADPSPVHKDGQNEADSAPEDLHSVGTS
RLLYHITDGDNPLLSPRCSIFSQSQRFNLDPESAPSPPSTQQFMMPRSSSRCSCGDGKEPQTITQLTKHI
QSLKRKIRKFEEKFEQEKKYRPSHGDKTSNPEVLKWMNDLAKGRKQLKELKLKLSEEQGSAPKGPPRNLL
CEQPTVPRENGKPEAAGPEPSSSGEETPDAALTCLKERREQLPPQEDSKVTKQDKNLIKPLYDRYRIIKQ
ILSTPSLIPTIEEEDSDEDRPQGSQQPSLADPASHLPVGDHLTYSNETEPVRALLPDEKKEVKPPALSMS
NLHEATMPVLLDHLRETRADKKRLRKALREFEEQFFKQTGRSPQKEDRIPMADEYYEYKHIKAKLRLLEV
LISKQDVAKTI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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