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Report for CCDS53553.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53553.1 Public Homo sapiens 10 CPEB3 24 110 108 CCDS HistoryNCBI Gene:22849Re-query CCDS DB by CCDS ID:53553.1Re-query CCDS DB by GeneID:22849See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53553.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000412050.8 ENSP00000398310.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000412050.8Link to Ensembl Protein Viewer:ENSP00000398310.2Re-query CCDS DB by Nucleotide ID:ENST00000412050Re-query CCDS DB by Protein ID:ENSP00000398310
Original member Current member NCBI NM_001178137.2 NP_001171608.1 Accepted alive Link to Nucleotide Sequence:NM_001178137.2Link to Protein Sequence:NP_001171608.1Re-query CCDS DB by Nucleotide ID:NM_001178137Re-query CCDS DB by Protein ID:NP_001171608Link to BLAST:NP_001171608.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171608.1 684 Q8NE35-2 684 100% 0 0

Chromosomal Locations for CCDS 53553.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 92052212 92052439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 92081320 92081501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 92091830 92091944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 92111076 92111194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 92143029 92143118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 92144945 92145112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 92180963 92181019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 92192546 92192636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 92239346 92240350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2055 nt):
ATGCAGGATGATTTACTGATGGACAAAAGCAAAACCCAGCCCCAGCCCCAGCAGCAGCAGCGGCAGCAGC
AGCAGCCCCAACCTGAGTCCAGCGTATCCGAAGCCCCGTCCACGCCCCTCTCCTCAGAGACCCCCAAGCC
GGAGGAAAACAGCGCAGTGCCGGCCCTCAGCCCAGCCGCTGCCCCCCCGGCCCCCAACGGCCCGGACAAG
ATGCAGATGGAATCACCGCTCCTGCCAGGCTTGAGTTTCCATCAGCCTCCTCAGCAGCCGCCGCCGCCTC
AGGAGCCCGCGGCACCGGGCGCGTCGCTGTCGCCGTCCTTCGGCAGCACCTGGTCCACGGGCACCACCAA
CGCGGTAGAGGACAGCTTCTTCCAGGGGATCACCCCAGTCAACGGGACCATGCTCTTCCAGAACTTCCCG
CACCATGTCAACCCAGTCTTCGGAGGCACTTTCTCCCCGCAGATCGGCCTGGCGCAGACCCAGCACCACC
AGCAGCCGCCGCCGCCTGCGCCCGCGCCGCAGCCGGCACAGCCAGCGCAGCCACCACAGGCGCAGCCCCC
GCAGCAGCGCCGCTCACCCGCCAGCCCCAGCCAGGCGCCCTACGCGCAGAGGAGCGCCGCCGCGGCGTAC
GGCCACCAGCCCATCATGACCAGCAAGCCGTCCTCGTCTTCGGCGGTTGCAGCCGCTGCTGCCGCAGCCG
CCGCCTCGTCGGCCTCGTCCAGCTGGAACACGCACCAAAGCGTGAATGCAGCCTGGAGCGCACCGTCCAA
CCCCTGGGGCGGCCTGCAGGCGGGCCGGGACCCTCGCCGGGCGGTCGGTGTGGGCGTGGGTGTGGGTGTC
GGGGTGCCTTCCCCGCTCAACCCCATCTCGCCGCTCAAAAAGCCCTTCTCCAGCAACGTGATCGCGCCGC
CCAAGTTCCCTCGCGCGGCCCCTCTCACTTCCAAGTCCTGGATGGAGGATAACGCTTTCCGGACCGATAA
TGGTAACAATCTGTTGCCATTTCAGGACCGGAGTAGGCCCTATGATACTTTTAACTTGCACTCGTTGGAG
AACTCCTTAATGGATATGATAAGGACTGATCATGAACCTCTGAAAGGACGCATGGGGATAAATTTCCATC
ATCCAGGAACAGATAATATTATGGCACTTAACAGTCGATCTTCTCTCTTTCCCTTTGAAGATGCCTTCCT
GGATGATAGCCATGGTGATCAAGCCTTGTCATCTGGCTTAAGTTCTCCCACTCGCTGTCAAAATGGGGAA
CGAGTAGAACGCTACTCTAGAAAGGTGTTTGTTGGAGGACTTCCTCCTGATATTGATGAAGATGAGATCA
CTGCCAGCTTTCGCAGGTTTGGACCTCTCGTAGTAGACTGGCCTCACAAAGCTGAAAGCAAGTCTTATTT
TCCTCCTAAAGGCTATGCCTTTCTGCTGTTCCAAGAGGAAAGCTCAGTACAAGCTTTGATAGATGCCTGC
CTAGAAGAAGATGGGAAACTCTACCTGTGTGTGTCAAGCCCCACCATCAAGGACAAGCCAGTGCAAATTC
GACCATGGAACCTAAGTGACAGTGACTTTGTAATGGATGGTTCTCAGCCTTTGGACCCCAGAAAAACTAT
CTTTGTTGGGGGAGTTCCACGACCCCTTCGAGCTGTTGAACTGGCAATGATCATGGACCGTTTGTACGGT
GGTGTCTGCTATGCTGGCATTGATACGGACCCAGAGCTGAAGTACCCCAAAGGTGCTGGCCGCGTGGCAT
TCTCCAATCAGCAGAGTTACATTGCAGCCATCAGCGCTCGTTTTGTGCAGCTTCAGCACAATGACATTGA
CAAACGGGTTGAAGTAAAGCCATATGTGCTGGATGATCAGATGTGTGATGAGTGCCAGGGCACACGCTGT
GGTGGGAAGTTTGCCCCGTTCTTCTGTGCCAACGTCACCTGTCTGCAGTATTACTGTGAATACTGCTGGG
CGAGCATACATTCCCGAGCCGGGCGGGAGTTCCACAAACCGCTGGTGAAGGAGGGAGGCGACCGCCCTCG
TCACGTCCCGTTCCGCTGGAGCTGA

Translation (684 aa):
MQDDLLMDKSKTQPQPQQQQRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDK
MQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWSTGTTNAVEDSFFQGITPVNGTMLFQNFP
HHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQAQPPQQRRSPASPSQAPYAQRSAAAAY
GHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQSVNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGV
GVPSPLNPISPLKKPFSSNVIAPPKFPRAAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLE
NSLMDMIRTDHEPLKGRMGINFHHPGTDNIMALNSRSSLFPFEDAFLDDSHGDQALSSGLSSPTRCQNGE
RVERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC
LEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYG
GVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHNDIDKRVEVKPYVLDDQMCDECQGTRC
GGKFAPFFCANVTCLQYYCEYCWASIHSRAGREFHKPLVKEGGDRPRHVPFRWS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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