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Report for CCDS53686.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53686.1 Public Homo sapiens 11 TMEM126B 24 110 108 CCDS HistoryNCBI Gene:55863Re-query CCDS DB by CCDS ID:53686.1Re-query CCDS DB by GeneID:55863See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53686.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393375.5 ENSP00000377039.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393375.5Link to Ensembl Protein Viewer:ENSP00000377039.1Re-query CCDS DB by Nucleotide ID:ENST00000393375Re-query CCDS DB by Protein ID:ENSP00000377039
Original member Current member NCBI NM_001193538.3 NP_001180467.1 Accepted alive Link to Nucleotide Sequence:NM_001193538.3Link to Protein Sequence:NP_001180467.1Re-query CCDS DB by Nucleotide ID:NM_001193538Re-query CCDS DB by Protein ID:NP_001180467Link to BLAST:NP_001180467.1
Original member Current member NCBI NM_001256546.2 NP_001243475.1 Accepted alive Link to Nucleotide Sequence:NM_001256546.2Link to Protein Sequence:NP_001243475.1Re-query CCDS DB by Nucleotide ID:NM_001256546Re-query CCDS DB by Protein ID:NP_001243475Link to BLAST:NP_001243475.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180467.1 200 Q8IUX1-5 200 100% 0 0
NP_001243475.1 200 Q8IUX1-5 200 100% 0 0

Chromosomal Locations for CCDS 53686.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 85631696 85631808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85634086 85634279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85635667 85635778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85636046 85636229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGGCAGCATCTATGCATGGTCAGCCCAGTCCTTCTCTAGAAGATGCAAAACTCAGAAGACCAATGGTCA
TAGAAATCATAGAAAAAAATTTTGACTATCTTAGAAAAGAAATGACACAAAATATATATCAAATGGCGAC
ATTTGGAACAACAGCTGGTTTCTCTGGAATATTCTCAAACTTCCTGTTCAGACGCTGCTTCAAGGTTAAA
CATGATGCTTTGAAGACATATGCATCATTGGCTACACTTCCATTTTTGTCTACTGTTGTTACTGACAAGC
TTTTTGTAATTGATGCTTTGTATTCAGATAATATAAGCAAGGAAAACTGTGTTTTCAGAAGCTCACTGAT
TGGCATAGTTTGTGGTGTTTTCTATCCCAGTTCTTTGGCTTTTACTAAAAATGGACGCCTGGCAACCAAG
TATCATACCGTTCCACTGCCACCAAAAGGAAGGGTTTTAATCCATTGGATGACGCTTTGTCAAACACAAA
TGAAATTAATGGCGATTCCTCTAGTCTTTCAGATTATGTTTGGAATATTAAATGGTCTATACCATTATGC
AGTATTTGAAGAGACACTTGAGAAAACTATACATGAAGAGTAA

Translation (200 aa):
MAASMHGQPSPSLEDAKLRRPMVIEIIEKNFDYLRKEMTQNIYQMATFGTTAGFSGIFSNFLFRRCFKVK
HDALKTYASLATLPFLSTVVTDKLFVIDALYSDNISKENCVFRSSLIGIVCGVFYPSSLAFTKNGRLATK
YHTVPLPPKGRVLIHWMTLCQTQMKLMAIPLVFQIMFGILNGLYHYAVFEETLEKTIHEE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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