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Report for CCDS53696.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53696.1 Public Homo sapiens 11 CNTN5 24 110 108 CCDS HistoryNCBI Gene:53942Re-query CCDS DB by CCDS ID:53696.1Re-query CCDS DB by GeneID:53942See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53696.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000524871.6 ENSP00000435637.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000524871.6Link to Ensembl Protein Viewer:ENSP00000435637.1Re-query CCDS DB by Nucleotide ID:ENST00000524871Re-query CCDS DB by Protein ID:ENSP00000435637
Original member Current member EBI ENST00000528682.5 ENSP00000436185.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000528682.5Link to Ensembl Protein Viewer:ENSP00000436185.1Re-query CCDS DB by Nucleotide ID:ENST00000528682Re-query CCDS DB by Protein ID:ENSP00000436185
Original member Current member NCBI NM_001243270.2 NP_001230199.1 Accepted alive Link to Nucleotide Sequence:NM_001243270.2Link to Protein Sequence:NP_001230199.1Re-query CCDS DB by Nucleotide ID:NM_001243270Re-query CCDS DB by Protein ID:NP_001230199Link to BLAST:NP_001230199.1
Original member Current member NCBI NM_014361.4 NP_055176.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014361.4Link to Protein Sequence:NP_055176.1Re-query CCDS DB by Nucleotide ID:NM_014361Re-query CCDS DB by Protein ID:NP_055176Link to BLAST:NP_055176.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230199.1 1100 O94779-1 1100 100% 0 0
NP_055176.1 1100 O94779-1 1100 100% 0 0

Chromosomal Locations for CCDS 53696.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 99556215 99556269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99819544 99819765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99844852 99844975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99845087 99845262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99916054 99916149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99956806 99957009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100002034 100002136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100061212 100061393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100070424 100070560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100071705 100071834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100074144 100074294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100191126 100191253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100193488 100193663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100224692 100224812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100255760 100255918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100271092 100271241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100297625 100297695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100299162 100299396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100308359 100308468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100340463 100340649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100341093 100341205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100350702 100350870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100356117 100356220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3303 nt):
ATGGCTTCCTCTTGGAAACTAATGCTGTTTCTGTCAGTCACCATGTGTCTTTCAGAGTATTCAAAATCTC
TTCCTGGTCTCTCCACTTCATATGCTGCTTTGTTAAGAATTAAGAAGAGTTCATCTTCATCTCTCTTTGG
TTCCAAAACCAGACCACGATACAGCAGCCCTTCATTAGGAACACTGAGTGCTTCTTCACCCAGCTGGCTA
GGGGCAGCTCAGAATTATTATTCCCCCATCAATCTTTATCATTCCTCAGATGCCTTCAAACAAGATGAAA
GTGTGGACTATGGGCCAGTTTTTGTGCAAGAACCAGATGATATTATTTTTCCAACTGATTCTGATGAAAA
GAAGGTAGCATTGAATTGTGAAGTTCGTGGCAATCCAGTTCCCAGTTACAGATGGCTTCGAAATGGAACA
GAAATAGATCTGGAAAGTGATTATCGCTACAGTTTGATAGATGGCACCTTCATTATAAGCAATCCAAGTG
AAGCAAAGGATTCTGGTCATTATCAGTGTTTAGCAACCAACACTGTGGGGAGTATTCTTAGTAGAGAAGC
TACACTGCAGTTTGCCTATCTGGGAAATTTTAGTGGCCGGACAAGAAGTGCAGTCTCTGTGAGGGAAGGC
CAGGGTGTCGTTCTGATGTGCTCTCCTCCGCCACATTCACCAGAGATCATCTATAGCTGGGTATTTAATG
AGTTCCCTTCCTTTGTGGCGGAAGACAGCCGGCGGTTCATCTCCCAGGAGACAGGCAACCTTTATATTTC
TAAAGTCCAAACATCAGATGTTGGCAGCTATATTTGTCTGGTGAAAAACACAGTGACGAATGCTAGAGTC
CTTAGTCCTCCAACGCCACTCACTCTGCGTAATGATGGTGTGATGGGAGAATATGAGCCGAAAATTGAGG
TCCATTTTCCTTTCACGGTTACAGCTGCTAAAGGAACAACTGTTAAGATGGAATGCTTTGCACTTGGCAA
CCCCGTTCCAACAATCACATGGATGAAGGTTAATGGTTATATTCCTAGTAAGGCACGTCTGCGGAAATCT
CAGGCGGTGCTGGAAATACCGAATGTACAGCTGGATGATGCAGGCATTTATGAGTGCAGAGCTGAAAACT
CACGTGGAAAAAATTCCTTTCGTGGACAATTACAAGTATACACCTACCCACACTGGGTAGAAAAACTGAA
TGATACTCAGTTAGACAGTGGGAGCCCTCTCCGATGGGAATGTAAGGCTACTGGAAAACCCAGACCCACG
TATCGTTGGCTGAAGAATGGAGTACCCCTCTCACCTCAGAGTAGGGTTGAGATGGTTAATGGAGTATTGA
TGATCCACAATGTGAATCAATCAGATGCTGGAATGTATCAGTGTTTGGCTGAAAATAAGTATGGAGCCAT
TTACGCTAGTGCTGAGCTGAAGATTCTAGCTTCAGCTCCCACTTTTGCACTGAATCAACTGAAGAAAACA
ATAATTGTTACCAAAGACCAAGAAGTTGTCATAGAGTGCAAACCCCAAGGCTCTCCAAAACCAACCATCT
CTTGGAAGAAAGGAGACAGAGCAGTTAGAGAAAACAAAAGAATAGCTATTCTTCCAGACGGGAGTCTACG
GATCCTAAATGCTTCCAAATCAGACGAGGGAAAGTACGTTTGCCGAGGGGAAAACGTCTTTGGTTCTGCT
GAAATTATAGCTTCGCTATCTGTAAAAGAACCTACAAGGATAGAACTTACTCCTAAAAGAACAGAATTGA
CAGTGGGAGAAAGCATTGTCCTTAATTGCAAAGCAATTCACGATGCTAGTTTGGATGTCACTTTCTACTG
GACTCTGAAAGGACAGCCTATTGATTTCGAGGAAGAGGGTGGACATTTTGAAAGCATCAGGGCCCAAGCA
TCCTCTGCAGATTTAATGATCAGGAACATCCTTCTGATGCATGCTGGGAGATATGGCTGCAGGGTACAGA
CCACAGCAGACAGTGTGTCAGATGAGGCAGAACTTCTTGTTAGGGGACCCCCAGGCCCACCTGGGATAGT
AATTGTTGAGGAAATAACCGAAAGTACGGCCACACTGTCCTGGAGCCCAGCAGCTGACAACCACAGCCCA
ATCTCCTCCTACAACCTTCAAGCTCGCAGCCCATTTTCCCTGGGCTGGCAAACAGTAAAGACAGTCCCAG
AAATCATAACAGGGGACATGGAGTCAGCCATGGCTGTGGACCTAAATCCCTGGGTGGAATATGAATTTCG
AGTGGTAGCCACCAACCCTATTGGGACAGGAGATCCAAGCACCCCATCTCGAATGATCCGCACAAATGAA
GCAGTTCCGAAGACAGCACCCACCAATGTAAGCGGAAGAAGTGGAAGAAGGCATGAGTTAGTCATTGCCT
GGGAGCCAGTATCTGAAGAGTTTCAGAATGGGGAAGGCTTCGGCTATATTGTGGCTTTCAGACCCAATGG
AACACGTGGCTGGAAGGAAAAAATGGTGACATCCTCTGAAGCTTCCAAATTCATTTATCGAGATGAAAGT
GTCCCTCCTCTTACTCCCTTTGAAGTGAAAGTTGGCGTTTATAACAATAAAGGAGATGGGCCTTTTAGTC
AAATTGTGGTCATCTGTTCAGCTGAAGGAGAACCCAGTGCTGCTCCCACAGATGTCAAGGCGACAAGTGT
GTCTGTGTCAGAGATTCTTGTTGCATGGAAACACATTAAAGAGAGTCTAGGAAGACCACAGGGATTTGAG
GTTGGTTACTGGAAAGACATGGAACAGGAAGATACAGCAGAAACAGTCAAAACTAGAGGGAATGAGTCTT
TCGTCATCCTAACAGGATTAGAAGGAAATACGTTATATCACTTCACAGTGAGGGCTTACAATGGAGCTGG
ATATGGGCCACCTAGCAGTGAAGTGAGTGCAACCACCAAGAAATCCCCTCCTAGTCAAGCACCTAGCAAC
CTCAGGTGGGAGCAGCAAGGCTCTCAGGTTTCTCTGGGCTGGGAACCCGTCATACCATTAGCCAACGAAT
CTGAAGTTGTGGGTTACAAGGTTTTTTATAGGCAAGAGGGTCACAGCAACAGCCAAGTTATTGAAACACA
GAAACTTCAAGCAGTAGTACCACTCCCAGATGCTGGAGTCTATATTATTGAAGTTCGAGCATATAGTGAA
GGAGGAGATGGAACAGCTAGTTCTCAAATTAGGGTACCATCATATTCAGGTGGAAAAATCACAAGTGCAC
AGTCGACCCTTCACTCTCTCTCCACATCTTCGTCATCAGTCACCTTGCTCTTGGCATTGATGATTCCTTC
AACTTCCTGGTGA

Translation (1100 aa):
MASSWKLMLFLSVTMCLSEYSKSLPGLSTSYAALLRIKKSSSSSLFGSKTRPRYSSPSLGTLSASSPSWL
GAAQNYYSPINLYHSSDAFKQDESVDYGPVFVQEPDDIIFPTDSDEKKVALNCEVRGNPVPSYRWLRNGT
EIDLESDYRYSLIDGTFIISNPSEAKDSGHYQCLATNTVGSILSREATLQFAYLGNFSGRTRSAVSVREG
QGVVLMCSPPPHSPEIIYSWVFNEFPSFVAEDSRRFISQETGNLYISKVQTSDVGSYICLVKNTVTNARV
LSPPTPLTLRNDGVMGEYEPKIEVHFPFTVTAAKGTTVKMECFALGNPVPTITWMKVNGYIPSKARLRKS
QAVLEIPNVQLDDAGIYECRAENSRGKNSFRGQLQVYTYPHWVEKLNDTQLDSGSPLRWECKATGKPRPT
YRWLKNGVPLSPQSRVEMVNGVLMIHNVNQSDAGMYQCLAENKYGAIYASAELKILASAPTFALNQLKKT
IIVTKDQEVVIECKPQGSPKPTISWKKGDRAVRENKRIAILPDGSLRILNASKSDEGKYVCRGENVFGSA
EIIASLSVKEPTRIELTPKRTELTVGESIVLNCKAIHDASLDVTFYWTLKGQPIDFEEEGGHFESIRAQA
SSADLMIRNILLMHAGRYGCRVQTTADSVSDEAELLVRGPPGPPGIVIVEEITESTATLSWSPAADNHSP
ISSYNLQARSPFSLGWQTVKTVPEIITGDMESAMAVDLNPWVEYEFRVVATNPIGTGDPSTPSRMIRTNE
AVPKTAPTNVSGRSGRRHELVIAWEPVSEEFQNGEGFGYIVAFRPNGTRGWKEKMVTSSEASKFIYRDES
VPPLTPFEVKVGVYNNKGDGPFSQIVVICSAEGEPSAAPTDVKATSVSVSEILVAWKHIKESLGRPQGFE
VGYWKDMEQEDTAETVKTRGNESFVILTGLEGNTLYHFTVRAYNGAGYGPPSSEVSATTKKSPPSQAPSN
LRWEQQGSQVSLGWEPVIPLANESEVVGYKVFYRQEGHSNSQVIETQKLQAVVPLPDAGVYIIEVRAYSE
GGDGTASSQIRVPSYSGGKITSAQSTLHSLSTSSSSVTLLLALMIPSTSW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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