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Report for CCDS53697.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53697.1 Public Homo sapiens 11 CNTN5 24 110 108 CCDS HistoryNCBI Gene:53942Re-query CCDS DB by CCDS ID:53697.1Re-query CCDS DB by GeneID:53942See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53697.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000418526.6 ENSP00000393229.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000418526.6Link to Ensembl Protein Viewer:ENSP00000393229.2Re-query CCDS DB by Nucleotide ID:ENST00000418526Re-query CCDS DB by Protein ID:ENSP00000393229
Original member Current member NCBI NM_175566.2 NP_780775.1 Accepted alive Link to Nucleotide Sequence:NM_175566.2Link to Protein Sequence:NP_780775.1Re-query CCDS DB by Nucleotide ID:NM_175566Re-query CCDS DB by Protein ID:NP_780775Link to BLAST:NP_780775.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780775.1 1026 O94779-2 1026 100% 0 0

Chromosomal Locations for CCDS 53697.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 99556215 99556269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99844852 99844975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99845087 99845262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99916054 99916149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 99956806 99957009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100002034 100002136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100061212 100061393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100070424 100070560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100071705 100071834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100074144 100074294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100191126 100191253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100193488 100193663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100224692 100224812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100255760 100255918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100271092 100271241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100297625 100297695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100299162 100299396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100308359 100308468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100340463 100340649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100341093 100341205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100350702 100350870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 100356117 100356220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3081 nt):
ATGGCTTCCTCTTGGAAACTAATGCTGTTTCTGTCAGTCACCATGTGTCTTTCAGAAAGTGTGGACTATG
GGCCAGTTTTTGTGCAAGAACCAGATGATATTATTTTTCCAACTGATTCTGATGAAAAGAAGGTAGCATT
GAATTGTGAAGTTCGTGGCAATCCAGTTCCCAGTTACAGATGGCTTCGAAATGGAACAGAAATAGATCTG
GAAAGTGATTATCGCTACAGTTTGATAGATGGCACCTTCATTATAAGCAATCCAAGTGAAGCAAAGGATT
CTGGTCATTATCAGTGTTTAGCAACCAACACTGTGGGGAGTATTCTTAGTAGAGAAGCTACACTGCAGTT
TGCCTATCTGGGAAATTTTAGTGGCCGGACAAGAAGTGCAGTCTCTGTGAGGGAAGGCCAGGGTGTCGTT
CTGATGTGCTCTCCTCCGCCACATTCACCAGAGATCATCTATAGCTGGGTATTTAATGAGTTCCCTTCCT
TTGTGGCGGAAGACAGCCGGCGGTTCATCTCCCAGGAGACAGGCAACCTTTATATTTCTAAAGTCCAAAC
ATCAGATGTTGGCAGCTATATTTGTCTGGTGAAAAACACAGTGACGAATGCTAGAGTCCTTAGTCCTCCA
ACGCCACTCACTCTGCGTAATGATGGTGTGATGGGAGAATATGAGCCGAAAATTGAGGTCCATTTTCCTT
TCACGGTTACAGCTGCTAAAGGAACAACTGTTAAGATGGAATGCTTTGCACTTGGCAACCCCGTTCCAAC
AATCACATGGATGAAGGTTAATGGTTATATTCCTAGTAAGGCACGTCTGCGGAAATCTCAGGCGGTGCTG
GAAATACCGAATGTACAGCTGGATGATGCAGGCATTTATGAGTGCAGAGCTGAAAACTCACGTGGAAAAA
ATTCCTTTCGTGGACAATTACAAGTATACACCTACCCACACTGGGTAGAAAAACTGAATGATACTCAGTT
AGACAGTGGGAGCCCTCTCCGATGGGAATGTAAGGCTACTGGAAAACCCAGACCCACGTATCGTTGGCTG
AAGAATGGAGTACCCCTCTCACCTCAGAGTAGGGTTGAGATGGTTAATGGAGTATTGATGATCCACAATG
TGAATCAATCAGATGCTGGAATGTATCAGTGTTTGGCTGAAAATAAGTATGGAGCCATTTACGCTAGTGC
TGAGCTGAAGATTCTAGCTTCAGCTCCCACTTTTGCACTGAATCAACTGAAGAAAACAATAATTGTTACC
AAAGACCAAGAAGTTGTCATAGAGTGCAAACCCCAAGGCTCTCCAAAACCAACCATCTCTTGGAAGAAAG
GAGACAGAGCAGTTAGAGAAAACAAAAGAATAGCTATTCTTCCAGACGGGAGTCTACGGATCCTAAATGC
TTCCAAATCAGACGAGGGAAAGTACGTTTGCCGAGGGGAAAACGTCTTTGGTTCTGCTGAAATTATAGCT
TCGCTATCTGTAAAAGAACCTACAAGGATAGAACTTACTCCTAAAAGAACAGAATTGACAGTGGGAGAAA
GCATTGTCCTTAATTGCAAAGCAATTCACGATGCTAGTTTGGATGTCACTTTCTACTGGACTCTGAAAGG
ACAGCCTATTGATTTCGAGGAAGAGGGTGGACATTTTGAAAGCATCAGGGCCCAAGCATCCTCTGCAGAT
TTAATGATCAGGAACATCCTTCTGATGCATGCTGGGAGATATGGCTGCAGGGTACAGACCACAGCAGACA
GTGTGTCAGATGAGGCAGAACTTCTTGTTAGGGGACCCCCAGGCCCACCTGGGATAGTAATTGTTGAGGA
AATAACCGAAAGTACGGCCACACTGTCCTGGAGCCCAGCAGCTGACAACCACAGCCCAATCTCCTCCTAC
AACCTTCAAGCTCGCAGCCCATTTTCCCTGGGCTGGCAAACAGTAAAGACAGTCCCAGAAATCATAACAG
GGGACATGGAGTCAGCCATGGCTGTGGACCTAAATCCCTGGGTGGAATATGAATTTCGAGTGGTAGCCAC
CAACCCTATTGGGACAGGAGATCCAAGCACCCCATCTCGAATGATCCGCACAAATGAAGCAGTTCCGAAG
ACAGCACCCACCAATGTAAGCGGAAGAAGTGGAAGAAGGCATGAGTTAGTCATTGCCTGGGAGCCAGTAT
CTGAAGAGTTTCAGAATGGGGAAGGCTTCGGCTATATTGTGGCTTTCAGACCCAATGGAACACGTGGCTG
GAAGGAAAAAATGGTGACATCCTCTGAAGCTTCCAAATTCATTTATCGAGATGAAAGTGTCCCTCCTCTT
ACTCCCTTTGAAGTGAAAGTTGGCGTTTATAACAATAAAGGAGATGGGCCTTTTAGTCAAATTGTGGTCA
TCTGTTCAGCTGAAGGAGAACCCAGTGCTGCTCCCACAGATGTCAAGGCGACAAGTGTGTCTGTGTCAGA
GATTCTTGTTGCATGGAAACACATTAAAGAGAGTCTAGGAAGACCACAGGGATTTGAGGTTGGTTACTGG
AAAGACATGGAACAGGAAGATACAGCAGAAACAGTCAAAACTAGAGGGAATGAGTCTTTCGTCATCCTAA
CAGGATTAGAAGGAAATACGTTATATCACTTCACAGTGAGGGCTTACAATGGAGCTGGATATGGGCCACC
TAGCAGTGAAGTGAGTGCAACCACCAAGAAATCCCCTCCTAGTCAAGCACCTAGCAACCTCAGGTGGGAG
CAGCAAGGCTCTCAGGTTTCTCTGGGCTGGGAACCCGTCATACCATTAGCCAACGAATCTGAAGTTGTGG
GTTACAAGGTTTTTTATAGGCAAGAGGGTCACAGCAACAGCCAAGTTATTGAAACACAGAAACTTCAAGC
AGTAGTACCACTCCCAGATGCTGGAGTCTATATTATTGAAGTTCGAGCATATAGTGAAGGAGGAGATGGA
ACAGCTAGTTCTCAAATTAGGGTACCATCATATTCAGGTGGAAAAATCACAAGTGCACAGTCGACCCTTC
ACTCTCTCTCCACATCTTCGTCATCAGTCACCTTGCTCTTGGCATTGATGATTCCTTCAACTTCCTGGTG
A

Translation (1026 aa):
MASSWKLMLFLSVTMCLSESVDYGPVFVQEPDDIIFPTDSDEKKVALNCEVRGNPVPSYRWLRNGTEIDL
ESDYRYSLIDGTFIISNPSEAKDSGHYQCLATNTVGSILSREATLQFAYLGNFSGRTRSAVSVREGQGVV
LMCSPPPHSPEIIYSWVFNEFPSFVAEDSRRFISQETGNLYISKVQTSDVGSYICLVKNTVTNARVLSPP
TPLTLRNDGVMGEYEPKIEVHFPFTVTAAKGTTVKMECFALGNPVPTITWMKVNGYIPSKARLRKSQAVL
EIPNVQLDDAGIYECRAENSRGKNSFRGQLQVYTYPHWVEKLNDTQLDSGSPLRWECKATGKPRPTYRWL
KNGVPLSPQSRVEMVNGVLMIHNVNQSDAGMYQCLAENKYGAIYASAELKILASAPTFALNQLKKTIIVT
KDQEVVIECKPQGSPKPTISWKKGDRAVRENKRIAILPDGSLRILNASKSDEGKYVCRGENVFGSAEIIA
SLSVKEPTRIELTPKRTELTVGESIVLNCKAIHDASLDVTFYWTLKGQPIDFEEEGGHFESIRAQASSAD
LMIRNILLMHAGRYGCRVQTTADSVSDEAELLVRGPPGPPGIVIVEEITESTATLSWSPAADNHSPISSY
NLQARSPFSLGWQTVKTVPEIITGDMESAMAVDLNPWVEYEFRVVATNPIGTGDPSTPSRMIRTNEAVPK
TAPTNVSGRSGRRHELVIAWEPVSEEFQNGEGFGYIVAFRPNGTRGWKEKMVTSSEASKFIYRDESVPPL
TPFEVKVGVYNNKGDGPFSQIVVICSAEGEPSAAPTDVKATSVSVSEILVAWKHIKESLGRPQGFEVGYW
KDMEQEDTAETVKTRGNESFVILTGLEGNTLYHFTVRAYNGAGYGPPSSEVSATTKKSPPSQAPSNLRWE
QQGSQVSLGWEPVIPLANESEVVGYKVFYRQEGHSNSQVIETQKLQAVVPLPDAGVYIIEVRAYSEGGDG
TASSQIRVPSYSGGKITSAQSTLHSLSTSSSSVTLLLALMIPSTSW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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