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Report for CCDS53698.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53698.1 Public Homo sapiens 11 CFAP300 24 110 108 CCDS HistoryNCBI Gene:85016Re-query CCDS DB by CCDS ID:53698.1Re-query CCDS DB by GeneID:85016See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53698.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000534360.1 ENSP00000435482.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000534360.1Link to Ensembl Protein Viewer:ENSP00000435482.1Re-query CCDS DB by Nucleotide ID:ENST00000534360Re-query CCDS DB by Protein ID:ENSP00000435482
Original member Current member NCBI NM_001195005.2 NP_001181934.1 Accepted alive Link to Nucleotide Sequence:NM_001195005.2Link to Protein Sequence:NP_001181934.1Re-query CCDS DB by Nucleotide ID:NM_001195005Re-query CCDS DB by Protein ID:NP_001181934Link to BLAST:NP_001181934.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001181934.1 99 Q9BRQ4-3 99 100% 0 0

Chromosomal Locations for CCDS 53698.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102047471 102047580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102047815 102047896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102058880 102058955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102075873 102075904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (300 nt):
ATGGCTACTGGGGAGCTCGGGGACTTGGGTGGCTACTACTTCAGGTTCTTGCCTCAGAAAACCTTCCAGT
CTCTGAGCTCTAAGGAGATCACCAGCCGGCTCCGCCAGTGGTCCATGCTGGGCAGAATCAAGGCGCAGGC
GTTCGGCTTTGACCAGACCTTTCAGTCCTATCGGAAGGATGATTTCGTTATGGCTTTTTTCAAAGACCCA
AATGTTATTCCCAATTTGAAGTTACTTTCAGATTCTTCTGGACAATGGATCATATTAGGTTTTGCTAGTG
GAAGACTCAGAAAAATATGA

Translation (99 aa):
MATGELGDLGGYYFRFLPQKTFQSLSSKEITSRLRQWSMLGRIKAQAFGFDQTFQSYRKDDFVMAFFKDP
NVIPNLKLLSDSSGQWIILGFASGRLRKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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