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Report for CCDS53772.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53772.1 Public Homo sapiens 12 TMTC1 24 110 108 CCDS HistoryNCBI Gene:83857Re-query CCDS DB by CCDS ID:53772.1Re-query CCDS DB by GeneID:83857See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53772.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000539277.6 ENSP00000442046.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000539277.6Link to Ensembl Protein Viewer:ENSP00000442046.1Re-query CCDS DB by Nucleotide ID:ENST00000539277Re-query CCDS DB by Protein ID:ENSP00000442046
Original member Current member NCBI NM_001193451.2 NP_001180380.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001193451.2Link to Protein Sequence:NP_001180380.1Re-query CCDS DB by Nucleotide ID:NM_001193451Re-query CCDS DB by Protein ID:NP_001180380Link to BLAST:NP_001180380.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180380.1 882 Q8IUR5-5 882 100% 0 0

Chromosomal Locations for CCDS 53772.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 29506846 29506986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29512043 29512120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29514482 29514604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29516349 29516486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29517427 29517571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29518472 29518607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29520618 29520720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29536209 29536317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29556857 29557000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29572105 29572218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29583407 29583574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29604178 29604299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29633147 29633336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29751666 29751872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29755709 29755885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29758704 29758777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29767898 29768075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 29783450 29783751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2649 nt):
ATGGTGGTGACCACCTCTGCCCGAGGCGGCGGCGGGGACCGCACACCCTCCCGGCGGCGGGGCTGCGGGC
TAGCGCCGGCCGGGGCCGCGGCGCTGCTGGCCGGGGCAAGCTGCCTGTGCTACGGCCGCTCCCTGCAGGG
CGAGTTCGTGCACGACGACGTGTGGGCGATCGTGAACAACCCCGACGTGCGGCCCGGCGCCCCGCTCCGC
TGGGGCATCTTCACCAACGACTTCTGGGGCAAGGGCATGGCCGAGAACACCAGCCACAAGTCCTACCGGC
CGCTCTGCGTCCTCACCTTCAAGCTAAACATATTTTTGACTGGTATGAACCCATTCTACTTTCATGCAGT
AAATATAATTTTACACTGCTTAGTGACTCTTGTGCTGATGTACACCTGTGATAAAACTGTCTTCAAGAAT
CGTGGACTTGCTTTTGTAACGGCATTGCTTTTTGCTGTACATCCTATTCATACTGAGGCGGTGGCTGGGA
TCGTTGGCAGAGCGGACGTGTTAGCGTGTCTGCTGTTTCTATTGGCCTTTCTCTCGTACAACAGGAGTCT
GGATCAGGGCTGTGTTGGGGGAAGTTTCCCTTCCACGGTGTCTCCCTTCTTCTTGCTGCTCAGTTTGTTT
CTGGGGACCTGTGCGATGCTGGTGAAAGAGACAGGCATCACGGTGTTTGGAGTGTGCTTGGTTTATGACC
TCTTTTCCCTTTCCAACAAGCAAGACAAGTCGAGCAATGGGGCCCTCTGTCCACGCAGCCCACAGCAGCC
CGGGAGCCCCCAGCCCTCCTCACTGCCAGGCCATCCTCACCGGGAGAATGGGAAGCAGCAGCGGTTCCCT
CACAAAGGAGCTTGGGGTGGCTGCCACTCTCCACTGCCACCAGAACCCAAGAGCAGTGGATTCCCAGTGT
CCCCACGAGCTGTGTGGTCCATGATGAGATTCCTCACCTATTCCTACCTCTTGGCCTTCAATGTGTGGCT
TCTGCTTGCACCCGTGACCCTGTGCTATGACTGGCAGGTCGGCAGTATTCCTCTGGTAGAGACCATATGG
GACATGCGGAACTTAGCCACCATCTTTCTGGCGGTTGTGATGGCCTTATTGAGCCTGCACTGCTTAGCAG
CCTTTAAGAGACTGGAGCACAAGGAGGTTTTAGTCGGCTTGTTGTTCCTGGTGTTCCCGTTCATTCCAGC
CAGCAACCTCTTCTTCAGGGTGGGTTTTGTGGTGGCGGAGAGAGTCCTTTACATGCCTAGCATGGGCTAC
TGCATCCTTTTTGTGCATGGACTGAGCAAGCTCTGCACTTGGCTGAATCGATGTGGGGCCACCACCCTGA
TTGTGTCCACTGTGTTGCTGCTGTTGCTTTTCTCTTGGAAAACTGTGAAACAGAATGAAATTTGGCTGTC
AAGAGAGTCCCTATTCAGGTCTGGAGTTCAAACTCTGCCCCACAATGCCAAGGTTCACTACAACTATGCC
AATTTCCTGAAGGACCAAGGTCGGAACAAGGAAGCGATCTACCACTACAGAACAGCTCTCAAGTTGTATC
CACGCCATGCAAGTGCGCTCAACAACCTTGGAACACTGACGAGAGACACAGCAGAGGCAAAGATGTACTA
TCAGAGGGCTCTCCAGCTCCATCCACAGCATAACCGGGCTCTTTTCAATCTGGGGAATCTCCTCAAGTCC
CAGGAGAAAAAGGAAGAAGCTATCACCTTACTGAAGGATTCCATCAAATATGGTCCAGAGTTTGCAGATG
CATATTCAAGCTTAGCTTCGTTATTGGCTGAGCAGGAGCGGTTTAAAGAAGCTGAAGAAATATACCAAAC
TGGAATAAAGAACTGTCCAGACAGCTCAGATTTACACAACAACTATGGGGTTTTCTTAGTTGATACTGGC
TTACCAGAAAAGGCAGTGGCCCATTACCAGCAGGCCATCAAACTTAGCCCCAGTCATCACGTGGCCATGG
TGAACTTGGGAAGACTCTACAGGTCACTGGGAGAGAACAGCATGGCTGAAGAATGGTACAAGCGCGCCCT
GCAGGTGGCACACAAAGCTGAGATATTGTCACCTTTGGGAGCACTGTATTACAACACTGGCCGATACGAA
GAGGCTTTGCAGATTTACCAGGAAGCTGCAGCACTTCAGCCTTCTCAGAGGGAGCTCCGCTTGGCACTGG
CTCAGGTTTTGGCCGTGATGGGTCAGACAAAAGAAGCTGAAAAGATGACCAATCACATTGTGTCAGAGGA
GACCGGATGCCTTGAATGCTATCGCCTCTTGTCAGCCATCTATAGCAAGCAGGAGAACCACGACAAGGCA
CTTGATGCTATAGACAAGGCTCTCCAGCTGAAACCAAAGGACCCAAAAGTCATTTCTGAACTTTTTTTCA
CAAAAGGAAACCAATTAAGAGAGCAGAACCTTCTCGACAAAGCTTTTGAGAGCTATAGAGTGGCTGTGCA
ACTAAACCCAGACCAAGCACAGGCCTGGATGAACATGGGTGGCATCCAACACATCAAGGGAAAATATGTG
TCTGCAAGAGCTTATTATGAGAGAGCCTTACAGCTGGTTCCAGACAGCAAACTGCTGAAGGAAAATCTTG
CCAAATTGGATCGCCTAGAAAAACGATTACAAGAAGTTCGAGAAAAGGATCAAACATAG

Translation (882 aa):
MVVTTSARGGGGDRTPSRRRGCGLAPAGAAALLAGASCLCYGRSLQGEFVHDDVWAIVNNPDVRPGAPLR
WGIFTNDFWGKGMAENTSHKSYRPLCVLTFKLNIFLTGMNPFYFHAVNIILHCLVTLVLMYTCDKTVFKN
RGLAFVTALLFAVHPIHTEAVAGIVGRADVLACLLFLLAFLSYNRSLDQGCVGGSFPSTVSPFFLLLSLF
LGTCAMLVKETGITVFGVCLVYDLFSLSNKQDKSSNGALCPRSPQQPGSPQPSSLPGHPHRENGKQQRFP
HKGAWGGCHSPLPPEPKSSGFPVSPRAVWSMMRFLTYSYLLAFNVWLLLAPVTLCYDWQVGSIPLVETIW
DMRNLATIFLAVVMALLSLHCLAAFKRLEHKEVLVGLLFLVFPFIPASNLFFRVGFVVAERVLYMPSMGY
CILFVHGLSKLCTWLNRCGATTLIVSTVLLLLLFSWKTVKQNEIWLSRESLFRSGVQTLPHNAKVHYNYA
NFLKDQGRNKEAIYHYRTALKLYPRHASALNNLGTLTRDTAEAKMYYQRALQLHPQHNRALFNLGNLLKS
QEKKEEAITLLKDSIKYGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYGVFLVDTG
LPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQVAHKAEILSPLGALYYNTGRYE
EALQIYQEAAALQPSQRELRLALAQVLAVMGQTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKA
LDAIDKALQLKPKDPKVISELFFTKGNQLREQNLLDKAFESYRVAVQLNPDQAQAWMNMGGIQHIKGKYV
SARAYYERALQLVPDSKLLKENLAKLDRLEKRLQEVREKDQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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