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Report for CCDS53787.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53787.1 Public Homo sapiens 12 ZNF641 24 110 108 CCDS HistoryNCBI Gene:121274Re-query CCDS DB by CCDS ID:53787.1Re-query CCDS DB by GeneID:121274See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53787.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000448928.7 ENSP00000394627.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000448928.7Link to Ensembl Protein Viewer:ENSP00000394627.3Re-query CCDS DB by Nucleotide ID:ENST00000448928Re-query CCDS DB by Protein ID:ENSP00000394627
Original member Current member NCBI NM_001172682.2 NP_001166153.1 Accepted alive Link to Nucleotide Sequence:NM_001172682.2Link to Protein Sequence:NP_001166153.1Re-query CCDS DB by Nucleotide ID:NM_001172682Re-query CCDS DB by Protein ID:NP_001166153Link to BLAST:NP_001166153.1
Original member Current member NCBI NM_001365803.1 NP_001352732.1 Accepted alive Link to Nucleotide Sequence:NM_001365803.1Link to Protein Sequence:NP_001352732.1Re-query CCDS DB by Nucleotide ID:NM_001365803Re-query CCDS DB by Protein ID:NP_001352732Link to BLAST:NP_001352732.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166153.1 415 Q96N77-3 415 100% 0 0
NP_001352732.1 415 Q96N77-3 415 100% 0 0

Chromosomal Locations for CCDS 53787.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 48342973 48343727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48344599 48344712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48347149 48347343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 48347907 48348090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGCTTTCAGAACAGACAGCAGCGCTGGGGACAGGATGGGAATCAATGAATGTACAGCTGGATGGAGCAG
AGCCCCAGGTGGAAAGGGGAAGCCAGGAAGAGCGGCCATGGAGAACAGTACCAGGACCTCTGGAGCACCT
GTGCTGTGACCTTGAAGAGGAGCCACAGTCCCTTCAGGAGAAGGCTCAGTCTGCTCCCTGGGTTCCTGCA
ATTCCCCAGGAGGGGAACACTGGAGACTGGGAGATGGCAGCTGCACTTCTTGCGGCTGGATCACAGGTGA
GCTCTGCTTCCCTTGGCGTCTCCTGTGGTCCCATCACTGCTGCCTTTGTATTGCTTTCGCATCAGCCCAT
TGATGAGTTGGCTCACATGATCATCAATGGATTTCCAATTCCCAAACTGGACATGCTTTCTCAACTAGAA
GGAGGAGAAGAACAATGGGTCCCTGACCCCCAGGACTTAGAGGAGAGGGACATTCTGAGGGTCACATATA
CAGGAGATGGAAGTGAACATGAGGGGGATACCCCTGAACTAGAAGCAGAACCTCCCAGAATGTTATCCAG
CGTGTCTGAAGATACTGTTCTCTGGAACCCGGAGCATGATGAGAGCTGGGATTCCATGCCCAGCAGCTCC
AGAGGAATGCTCCTGGGGCCCCCTTTTCTTCAGGAAGATAGTTTCTCAAACCTGCTGTGTAGCACAGAGA
TGGATTCCCTGTTAAGACCCCACACATGCCCCCAGTGTGGGAAACAGTTTGTATGGGGTTCCCACCTTGC
CAGGCATCAACAAACACACACTGGGGAGAGACCCTACAGCTGCCTCAAGTGTGAGAAGACCTTTGGGCGA
AGACATCACCTCATCAGGCACCAGAAAACCCACCTACATGACAAGACCAGCAGGTGCTCTGAGTGTGGTA
AGAATTTCCGATGCAACTCCCATCTGGCCAGCCACCAGAGAGTGCATGCAGAAGGCAAATCCTGCAAAGG
CCAAGAGGTTGGAGAGAGCCCTGGCACAAGGAAACGGCAGCGTGCCCCACCAGTGCCAAAGTGTCACGTG
TGCACTGAATGTGGGAAGAGCTTTGGCCGAAGGCACCACCTTGTGAGACACTGGCTGACCCACACTGGGG
AGAAGCCCTTCCAGTGCCCTCGCTGTGAGAAGAGCTTTGGCCGAAAACATCACCTGGACAGGCACCTGCT
CACCCACCAGGGACAAAGTCCCCGGAACAGCTGGGACAGAGGAACATCTGTCTTTTGA

Translation (415 aa):
MLSEQTAALGTGWESMNVQLDGAEPQVERGSQEERPWRTVPGPLEHLCCDLEEEPQSLQEKAQSAPWVPA
IPQEGNTGDWEMAAALLAAGSQVSSASLGVSCGPITAAFVLLSHQPIDELAHMIINGFPIPKLDMLSQLE
GGEEQWVPDPQDLEERDILRVTYTGDGSEHEGDTPELEAEPPRMLSSVSEDTVLWNPEHDESWDSMPSSS
RGMLLGPPFLQEDSFSNLLCSTEMDSLLRPHTCPQCGKQFVWGSHLARHQQTHTGERPYSCLKCEKTFGR
RHHLIRHQKTHLHDKTSRCSECGKNFRCNSHLASHQRVHAEGKSCKGQEVGESPGTRKRQRAPPVPKCHV
CTECGKSFGRRHHLVRHWLTHTGEKPFQCPRCEKSFGRKHHLDRHLLTHQGQSPRNSWDRGTSVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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