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Report for CCDS53816.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53816.1 Public Homo sapiens 12 SLC6A15 24 110 108 CCDS HistoryNCBI Gene:55117Re-query CCDS DB by CCDS ID:53816.1Re-query CCDS DB by GeneID:55117See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53816.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000552192.5 ENSP00000450145.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000552192.5Link to Ensembl Protein Viewer:ENSP00000450145.1Re-query CCDS DB by Nucleotide ID:ENST00000552192Re-query CCDS DB by Protein ID:ENSP00000450145
Original member Current member NCBI NM_001146335.3 NP_001139807.1 Accepted alive Link to Nucleotide Sequence:NM_001146335.3Link to Protein Sequence:NP_001139807.1Re-query CCDS DB by Nucleotide ID:NM_001146335Re-query CCDS DB by Protein ID:NP_001139807Link to BLAST:NP_001139807.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139807.1 623 Q9H2J7-3 623 100% 0 0

Chromosomal Locations for CCDS 53816.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 84861632 84862006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84863439 84863601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84867034 84867193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84870478 84870670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84872602 84872794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84873087 84873328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84876497 84876607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84883859 84884040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84885435 84885561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84885911 84886036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1872 nt):
ATGGTAATAGGTATTCCCCTTTTTTTCTTGGAACTCTCTGTGGGTCAAAGAATTCGGCGAGGCAGCATTG
GTGTATGGAATTACATAAGCCCTAAACTGGGCGGGATTGGATTTGCAAGTTGTGTAGTGTGCTATTTTGT
AGCTCTCTACTACAACGTCATCATTGGCTGGAGTTTGTTTTATTTTTCTCAGTCTTTTCAGCAACCCCTG
CCTTGGGATCAGTGTCCTTTGGTGAAAAATGCTTCACACACTTTTGTAGAACCAGAATGTGAACAAAGTT
CTGCCACCACCTATTACTGGTACAGGGAAGCACTGAATATTTCAAGTTCCATTTCTGAAAGTGGGGGCTT
AAACTGGAAGATGACCATCTGCTTGTTGGCTGCCTGGGTCATGGTTTGCTTGGCTATGATCAAAGGCATT
CAGTCTTCTGGAAAAATCATATATTTTAGTTCTCTGTTTCCATATGTGGTACTTATTTGCTTCCTCATCA
GAGCATTCCTTTTAAATGGTTCAATTGATGGCATTCGCCACATGTTTACCCCTAAGCTTGAAATAATGCT
GGAGCCCAAGGTCTGGAGAGAAGCTGCTACTCAAGTGTTCTTTGCCTTAGGTCTGGGATTTGGTGGTGTC
ATTGCCTTTTCAAGCTACAACAAGAGAGACAACAACTGCCACTTTGATGCTGTCCTGGTGTCCTTCATCA
ATTTTTTCACTTCTGTCCTGGCAACATTGGTGGTGTTTGCAGTTCTGGGCTTCAAAGCAAATGTCATAAA
TGAGAAATGCATTACACAAAATTCAGAGACGATCATGAAATTTTTGAAAATGGGGAACATTAGTCAGGAT
ATTATTCCCCATCATATCAACCTTTCAACTGTTACTGCAGAAGATTATCATTTAGTTTATGACATCATTC
AAAAAGTGAAAGAAGAAGAGTTTCCTGCTCTTCATCTCAATTCCTGTAAAATTGAAGAAGAGCTAAATAA
AGCTGTTCAGGGGACCGGCTTAGCTTTTATTGCCTTTACAGAAGCGATGACACATTTTCCTGCATCTCCC
TTCTGGTCAGTGATGTTTTTCCTCATGCTGGTCAATCTAGGCCTTGGCAGTATGTTTGGAACCATTGAAG
GGATTGTCACGCCTATTGTGGACACTTTCAAAGTGAGGAAAGAAATTCTTACTGTTATCTGTTGTCTTCT
GGCATTTTGTATTGGCCTGATATTTGTGCAACGCTCTGGAAATTACTTTGTTACAATGTTTGATGATTAT
TCTGCTACACTGCCTCTGCTAATTGTAGTCATTTTGGAGAATATTGCTGTATGCTTTGTTTATGGCATAG
ATAAGTTTATGGAAGACCTAAAAGATATGCTGGGCTTTGCTCCCAGCAGATATTACTACTATATGTGGAA
ATATATTTCTCCTCTAATGCTATTATCATTGCTAATAGCTAGTGTTGTGAATATGGGATTAAGTCCTCCT
GGCTATAACGCATGGATTGAAGATAAGGCATCTGAAGAATTTCTGAGCTATCCAACATGGGGACTGGTTG
TTTGTGTCTCTCTGGTTGTCTTTGCAATACTCCCAGTCCCTGTAGTTTTCATTGTTCGTCGCTTCAACCT
TATAGATGATAGTTCTGGTAATTTAGCATCTGTGACCTATAAGAGAGGAAGGGTCCTGAAAGAGCCTGTG
AACTTAGAGGGCGATGATACAAGCCTCATTCACGGAAAAATACCGAGCGAGATGCCATCTCCAAATTTTG
GTAAAAATATTTATCGAAAACAGAGTGGATCCCCAACTCTGGATACTGCTCCCAATGGACGGTATGGAAT
AGGGTACTTGATGGCAGATATTATGCCAGATATGCCAGAATCTGATTTGTAG

Translation (623 aa):
MVIGIPLFFLELSVGQRIRRGSIGVWNYISPKLGGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPL
PWDQCPLVKNASHTFVEPECEQSSATTYYWYREALNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGI
QSSGKIIYFSSLFPYVVLICFLIRAFLLNGSIDGIRHMFTPKLEIMLEPKVWREAATQVFFALGLGFGGV
IAFSSYNKRDNNCHFDAVLVSFINFFTSVLATLVVFAVLGFKANVINEKCITQNSETIMKFLKMGNISQD
IIPHHINLSTVTAEDYHLVYDIIQKVKEEEFPALHLNSCKIEEELNKAVQGTGLAFIAFTEAMTHFPASP
FWSVMFFLMLVNLGLGSMFGTIEGIVTPIVDTFKVRKEILTVICCLLAFCIGLIFVQRSGNYFVTMFDDY
SATLPLLIVVILENIAVCFVYGIDKFMEDLKDMLGFAPSRYYYYMWKYISPLMLLSLLIASVVNMGLSPP
GYNAWIEDKASEEFLSYPTWGLVVCVSLVVFAILPVPVVFIVRRFNLIDDSSGNLASVTYKRGRVLKEPV
NLEGDDTSLIHGKIPSEMPSPNFGKNIYRKQSGSPTLDTAPNGRYGIGYLMADIMPDMPESDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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