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Report for CCDS53857.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53857.1 Public Homo sapiens 13 SPATA13 24 110 108 CCDS HistoryNCBI Gene:221178Re-query CCDS DB by CCDS ID:53857.1Re-query CCDS DB by GeneID:221178See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53857.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382108.8 ENSP00000371542.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382108.8Link to Ensembl Protein Viewer:ENSP00000371542.3Re-query CCDS DB by Nucleotide ID:ENST00000382108Re-query CCDS DB by Protein ID:ENSP00000371542
Original member Current member EBI ENST00000424834.6 ENSP00000398560.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000424834.6Link to Ensembl Protein Viewer:ENSP00000398560.2Re-query CCDS DB by Nucleotide ID:ENST00000424834Re-query CCDS DB by Protein ID:ENSP00000398560
Original member Current member NCBI NM_001166271.3 NP_001159743.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001166271.3Link to Protein Sequence:NP_001159743.1Re-query CCDS DB by Nucleotide ID:NM_001166271Re-query CCDS DB by Protein ID:NP_001159743Link to BLAST:NP_001159743.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159743.1 1277 Q96N96-6 1277 100% 0 0

Chromosomal Locations for CCDS 53857.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 24222930 24224582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24249477 24249842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24251718 24251862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24284135 24284271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24286214 24286393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24286765 24286950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24288999 24289178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24290652 24290884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24294739 24294868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24297363 24297735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24300401 24300475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 24302598 24302773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3834 nt):
ATGACCCAGGCTGCCGTGCGGCCCTGGGCACCCTGCCTGGAGAACATGACCACTGCCCCAAACGGCCTCG
GGCCAGGCCCCGCAGCCCCCTGTGCAGGCTCGGACCTGAAAGACGCCAAGATGGTGACCTCCCTTGCGTG
TGGAAATGGAGTCTGTGGCTGCAGCCCTGGTGGCGACACGGACACCCAGGAAGCCAAACTCAGCCCAGCC
AAGCTTGTGCGCCTCTTTTCCACCAGTCGGAAGAGGACGGGTGCCCACCCCGAGCGGCCCCACTCCATGG
TCCTGGTGGGGAACTCCTCCACATGGAACACCCTCGCCTCCTTCCGGAAAATGGGATCCTTTAAGAAACT
GAAGTCCTCAGTCCTGAAAGGAATTCAGAGCCGAGAGGGGTCAAATGCCTGTTCAAAGGGAGAGGCTTCG
GAGCATGGCCTGGGAAAGTCCATCCCAAATGGCGCTGTCCCAGGAGCCCAGGCAAGCAGGGGCTCCCCCT
TAGCACCGGGACCAGCATGTGGTGCCCTCAGGCCAGCAGAGTGGGGCACATTGGATGGCTCCGACCTCGA
GGACACGGACGATGCCTTCCAGCGGAGCACACACCGCTCCCGCAGCCTCCGCAGAGCCTACGGCCTGGGC
CGCATCTGCCTGCTGGATGCGCCCCAGAACCATGCGACACCCACGATAGCCACTGGCCAGGTGCCCGCCG
TGTGTGAGATTCTCGTGAGGGACCCTGAAAACAACAGCATGGGCTACAGGAGGAGCAAGAGCACGGACAA
TCTTGCCTTTCTGAAGAAGAGCTCCTTTAAGCGGAAGTCCACCTCCAATCTTGCAGACCTCAGGACGGCC
CATGACGCACGGGTACCACAGAGGACCCTGAGCAGTTCCTCCACTGACTCCCAAAAGCTTGGGTCAGGAA
GGACCAAACGCTGGAGGAGCCCGATAAGGGCCAAGGACTTTGACAGAGTCTTCAAACTTGTGAGCAATGT
GACTGAGGCTGCCTGGAGGAGGGAGAGTCCTAGGAGTGGGGCCCCATCCCCTGGAGAGGCCAGCCTGAGA
CTTCAGGCACACAGCCGGCTGCATGACGACTACTCCCGCCGCGTCTCCAGGAGCACTGAGCAGGACAGCA
GGCGGGGCGGGGCGGTCATGCATGGGACCACTGCAACCTGCACCGTGGCCCCCGGTTTCGGCTCAGCCAC
CTCTAAGGGGCCCCACCTAGACGCTGACACTGCCGTATTTCCTCTTGAAACCAAAAGTTCCTGGGCGGTG
GAAAGCGACAGTTCCTGCACTTGCAGCTCTTTGCCAAGCCCGATTGTCCAGGATGTGTTGAGCAAAGACT
CCTGTGACCCAAACGCTGGCAGCCAGTTGACATTTGACCCTGAGCAGCCTCCCACCCCTCTAAGGCCCAC
CACACCCAAGCCCCAGAGCCCTCAGAGCCCCCAGAGCCCCGGGGCAGGAAGTGCCAGCTGTCACAGCAAT
CACAGTGCCCTGTCCGCGAATTCAGAGGAAAGTGAAGGAAGGGCAGAAGAGCCTGCTCAGAGAGAGCCAG
GGCCTGTGTCCTTGCAGGATCCCCTGGAAGCCACACATGGTGATGAGGGCAGCAAGGACCTTCTGGTGAA
CATTGGTGTGGCAGCCGGCCCAGAAGAAAAGGAGAAGGAGGAGGTCGTCCCTGATGGCCCCTGGAGGCGA
AGCTCATCACAGGATGAGGAAAGGACAGAGGCACAGAGAACCCCCAAGAGGAGATGGGGCTCTGGGAGAC
GGCCAAGGCCTCGGCCATTCTCTGACTACGGCCAGCTGGCCAGCCGCAGTTTGTCTATTCCTGAAGACTC
GGTTGCTGCAGACCCCCAGAAGGAAGACCGTGTGGACGAGGACCCCCAGGCAAGCATGACTTCTGCCAGC
CCTGAAGACCAGAATGCTCCAGTGGGCTGCCCCAAAGGAGCCCGGAGAAGGCGCCCCATTTCCGTGATAG
GTGGGGTCAGCTTGTATGGGACCAACCAGACGGAGGAACTGGACAATCTTCTGACCCAACCGGCTTCCAG
GCCGCCCATGCCTGCTCACCAGGTGCCACCCTACAAGGCTGTGTCGGCCCGGTTCCGGCCCTTCACATTC
TCCCAGAGCACCCCCATTGGGTTGGACCGTGTGGGACGCCGGCGGCAGATGAGAGCATCCAACGTTTCTT
CAGATGGAGGTACTGAGCCCTCTGCCTTAGTGGATGACAACGGTAGTGAGGAGGACTTCAGCTATGAAGA
CCTCTGCCAGGCCAGCCCTCGGTACCTGCAGCCCGGCGGGGAGCAGCTGGCCATCAATGAGCTGATCAGT
GATGGCAACGTGGTCTGCGCAGAAGCCCTGTGGGACCATGTGACCATGGATGACCAGGAACTGGGCTTCA
AAGCCGGGGATGTCATCCAGGTTCTGGAAGCCTCCAACAAGGACTGGTGGTGGGGCCGCAGTGAAGATAA
GGAAGCCTGGTTCCCCGCGAGCTTCGTCAGATTGCGAGTGAATCAGGAAGAGCTGTCGGAAAACTCCAGC
AGCACCCCCAGTGAGGAGCAGGACGAGGAGGCCAGCCAGAGCCGCCACAGACACTGTGAGAACAAGCAGC
AGATGCGGACCAACGTCATCCGGGAGATCATGGACACCGAGCGGGTGTACATCAAACACCTCAGGGACAT
CTGTGAGGGCTATATCCGACAGTGCCGCAAGCACACAGGAATGTTCACCGTTGCGCAGCTAGCCACTATT
TTTGGAAACATTGAAGATATTTACAAATTCCAAAGAAAGTTTCTGAAAGACCTTGAGAAACAGTACAACA
AAGAGGAACCTCACTTAAGTGAAATAGGATCTTGCTTTCTTCAAAATCAAGAGGGCTTTGCCATCTATTC
CGAGTACTGCAACAACCACCCGGGCGCCTGCCTGGAGCTCGCCAACCTCATGAAGCAGGGCAAGTACAGA
CATTTCTTTGAAGCCTGCCGCCTGCTGCAGCAGATGATTGACATCGCCATCGACGGGTTCCTGCTCACAC
CAGTGCAGAAGATCTGCAAATACCCGCTGCAGCTGGCCGAGCTGCTCAAGTATACCACACAGGAACACGG
TGATTACAGCAACATAAAGGCAGCATATGAGGCCATGAAGAATGTGGCCTGTCTGATCAACGAGCGCAAG
CGCAAGCTGGAGAGCATCGACAAGATAGCTCGCTGGCAGGTGTCTATCGTGGGCTGGGAGGGACTGGATA
TCTTAGACCGAAGCTCAGAATTGATTCATTCTGGGGAGCTGACCAAAATCACTAAGCAAGGCAAAAGCCA
GCAGCGGACGTTCTTCCTGTTTGACCACCAGCTGGTGTCCTGCAAGAAGGACCTGCTGCGCAGGGACATG
CTGTACTACAAGGGCCGGCTGGACATGGATGAGATGGAGCTTGTGGACCTGGGGGATGGGCGCGACAAGG
ACTGCAACCTCAGCGTGAAAAATGCCTTCAAGCTCGTCAGTAGGACCACAGACGAGGTTTATTTGTTTTG
TGCCAAAAAACAAGAAGACAAGGCGAGGTGGCTGCAGGCCTGTGCAGATGAAAGGAGGCGGGTGCAAGAG
GACAAGGAGATGGGAATGGAAATTTCAGAAAACCAGAAGAAACTTGCCATGTTAAATGCTCAAAAGGCAG
GACATGGAAAGTCAAAAGGCTACAACAGGTGCCCTGTGGCCCCACCGCACCAGGGCCTGCACCCCATCCA
CCAGCGCCACATCACTATGCCCACAAGCGTCCCCCAGCAGCAGGTCTTTGGCCTGGCGGAACCCAAGAGG
AAGTCCTCGCTCTTCTGGCACACCTTCAACAGGCTCACCCCCTTCCGGAAATGA

Translation (1277 aa):
MTQAAVRPWAPCLENMTTAPNGLGPGPAAPCAGSDLKDAKMVTSLACGNGVCGCSPGGDTDTQEAKLSPA
KLVRLFSTSRKRTGAHPERPHSMVLVGNSSTWNTLASFRKMGSFKKLKSSVLKGIQSREGSNACSKGEAS
EHGLGKSIPNGAVPGAQASRGSPLAPGPACGALRPAEWGTLDGSDLEDTDDAFQRSTHRSRSLRRAYGLG
RICLLDAPQNHATPTIATGQVPAVCEILVRDPENNSMGYRRSKSTDNLAFLKKSSFKRKSTSNLADLRTA
HDARVPQRTLSSSSTDSQKLGSGRTKRWRSPIRAKDFDRVFKLVSNVTEAAWRRESPRSGAPSPGEASLR
LQAHSRLHDDYSRRVSRSTEQDSRRGGAVMHGTTATCTVAPGFGSATSKGPHLDADTAVFPLETKSSWAV
ESDSSCTCSSLPSPIVQDVLSKDSCDPNAGSQLTFDPEQPPTPLRPTTPKPQSPQSPQSPGAGSASCHSN
HSALSANSEESEGRAEEPAQREPGPVSLQDPLEATHGDEGSKDLLVNIGVAAGPEEKEKEEVVPDGPWRR
SSSQDEERTEAQRTPKRRWGSGRRPRPRPFSDYGQLASRSLSIPEDSVAADPQKEDRVDEDPQASMTSAS
PEDQNAPVGCPKGARRRRPISVIGGVSLYGTNQTEELDNLLTQPASRPPMPAHQVPPYKAVSARFRPFTF
SQSTPIGLDRVGRRRQMRASNVSSDGGTEPSALVDDNGSEEDFSYEDLCQASPRYLQPGGEQLAINELIS
DGNVVCAEALWDHVTMDDQELGFKAGDVIQVLEASNKDWWWGRSEDKEAWFPASFVRLRVNQEELSENSS
STPSEEQDEEASQSRHRHCENKQQMRTNVIREIMDTERVYIKHLRDICEGYIRQCRKHTGMFTVAQLATI
FGNIEDIYKFQRKFLKDLEKQYNKEEPHLSEIGSCFLQNQEGFAIYSEYCNNHPGACLELANLMKQGKYR
HFFEACRLLQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTTQEHGDYSNIKAAYEAMKNVACLINERK
RKLESIDKIARWQVSIVGWEGLDILDRSSELIHSGELTKITKQGKSQQRTFFLFDHQLVSCKKDLLRRDM
LYYKGRLDMDEMELVDLGDGRDKDCNLSVKNAFKLVSRTTDEVYLFCAKKQEDKARWLQACADERRRVQE
DKEMGMEISENQKKLAMLNAQKAGHGKSKGYNRCPVAPPHQGLHPIHQRHITMPTSVPQQQVFGLAEPKR
KSSLFWHTFNRLTPFRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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