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Report for CCDS53879.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53879.1 Public Homo sapiens 13 BIVM 24 110 108 CCDS HistoryNCBI Gene:54841Re-query CCDS DB by CCDS ID:53879.1Re-query CCDS DB by GeneID:54841See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53879.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000448849.3 ENSP00000412794.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000448849.3Link to Ensembl Protein Viewer:ENSP00000412794.2Re-query CCDS DB by Nucleotide ID:ENST00000448849Re-query CCDS DB by Protein ID:ENSP00000412794
Original member Current member NCBI NM_001159596.2 NP_001153068.1 Accepted alive Link to Nucleotide Sequence:NM_001159596.2Link to Protein Sequence:NP_001153068.1Re-query CCDS DB by Nucleotide ID:NM_001159596Re-query CCDS DB by Protein ID:NP_001153068Link to BLAST:NP_001153068.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153068.1 281 Q86UB2-2 281 100% 0 0

Chromosomal Locations for CCDS 53879.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 102821119 102821132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102821743 102821847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102822065 102822159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102831565 102831697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102834466 102834552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102838643 102838739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 102839551 102839865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (846 nt):
ATGGGAGCTGGAAACCTTCCACCTATTACCCAAGAAGAAGCTTTACATATTCTGGGCTTTCAACCTCCAT
TTGAAGATATTAGGTTTGGTCCTTTCACGGGGAATACAACACTTATGAGGTGGTTTAGACAAATTAATGA
CCACTTCCATGTAAAAGGATGCTCTTATGTTCTATATAAGCCTCATGGGAAGAATAAAACAGCAGGAGAA
ACTGCTTCAGGGGCCCTGTCAAAGTTAACCCGTGGATTGAAAGATGAATCGCTGGCTTATATCTATCATT
GCCAAAATCATTATTTTTGTCCAATTGGCTTCGAAGCAACCCCTGTTAAAGCTAATAAAGCATTCAGCAG
GGGACCTCTCTCACCACAGGAAGTTGAATATTGGATCTTAATTGGAGAATCAAGTAGAAAACATCCTGCC
ATTCACTGTAAAAAATGGGCAGATATTGTTACTGATCTAAACACTCAAAATCCAGAATACCTGGATATCC
GGCACTTAGAGAGGGGACTGCAGTATAGAAAAACAAAGAAGCCAACATTTTTTTCTTCTCAGGTTGGGGG
AAATTTGCATTGCATCATAGCATTCCAGAGACTTAACTGGCAAAGATTTGGCCTTTGGAACTTTCCATTT
GGAACCATTAGACAAGAATCACAACCTCCAACACATGCCCAGGGAATTGCCAAATCTGAGAGTGAAGACA
ATATTTCCAAGAAGCAGCATGGGCGTCTGGGCCGGTCTTTCAGTGCTAGTTTCCATCAGGACTCGGCATG
GAAAAAGATGTCTAGTATCCATGAGAGAAGGAACAGTGGTTACCAGGGTTACAGTGATTACGATGGGAAT
GATTGA

Translation (281 aa):
MGAGNLPPITQEEALHILGFQPPFEDIRFGPFTGNTTLMRWFRQINDHFHVKGCSYVLYKPHGKNKTAGE
TASGALSKLTRGLKDESLAYIYHCQNHYFCPIGFEATPVKANKAFSRGPLSPQEVEYWILIGESSRKHPA
IHCKKWADIVTDLNTQNPEYLDIRHLERGLQYRKTKKPTFFSSQVGGNLHCIIAFQRLNWQRFGLWNFPF
GTIRQESQPPTHAQGIAKSESEDNISKKQHGRLGRSFSASFHQDSAWKKMSSIHERRNSGYQGYSDYDGN
D


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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