NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS53903.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53903.1 Public Homo sapiens 14 PLEKHD1 24 110 108 CCDS HistoryNCBI Gene:400224Re-query CCDS DB by CCDS ID:53903.1Re-query CCDS DB by GeneID:400224See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53903.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322564.9 ENSP00000317175.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000322564.9Link to Ensembl Protein Viewer:ENSP00000317175.7Re-query CCDS DB by Nucleotide ID:ENST00000322564Re-query CCDS DB by Protein ID:ENSP00000317175
Original member Current member NCBI NM_001161498.2 NP_001154970.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001161498.2Link to Protein Sequence:NP_001154970.1Re-query CCDS DB by Nucleotide ID:NM_001161498Re-query CCDS DB by Protein ID:NP_001154970Link to BLAST:NP_001154970.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001154970.1 506 A6NEE1 506 100% 0 0

Chromosomal Locations for CCDS 53903.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 69484966 69485114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69500115 69500208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69500577 69500666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69500871 69500947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69501734 69501825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69502827 69502879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69522283 69522377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69524229 69524322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69525944 69526122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69526697 69526829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69527188 69527332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69527783 69527932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69528250 69528419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1521 nt):
ATGTTCACGTCCAAGTCCAACTCGGTGTCGCCCTCGCCGTCCCTGGAGCAGGCTGACTCGGACGCCCTGG
ATATCAGCACCAAAGTGCAGCTCTACGGCGTGCTGTGGAAGAGGCCTTTCGGCAGGCCGTCGGCCAAGTG
GTCCCGGCGGTTTTTCATCATCAAAGAGAGCTTTCTGCTTTACTACTCTGAGAGCGAAAAAAAGAGCTTT
GAAACCAATAAATACTTCAATATACATCCTAAGGGCGTCATCCCTCTGGGGGGCTGCCTGGTGGAGCCCA
AGGAAGAGCCTAGCATGCCCTATGCCATGAAGATCTCCCACCAGGACTTCCATGGGAACATCTTGCTTGC
TGCTGAGTCGGAGTTTGAGCAGACCCAGTGGCTGGAGATGCTGCAGGAGTCTGGGAAGGTGACCTGGAAG
AATGCCCAGCTGGGAGAAGCCATGATCAAAAGCCTGGAGGCCCAGGGGCTGCAGTTGGCTAAGGAAAAGC
AGGAGTATTTAGACAAACTGATGGAAGAGACCGAAGAACTCTGCCTTCAGAGGGAGCAGAGAGAGGAGCT
TGAGCGCCTTAACCAGGTGCTGGAGGCCGAGAAGCAGCAGTTCGAGGAGGTGGTGCAGGAGCTGAGAATG
GAGCAGGAGCAGATCAAGAGGGAGCTGGAACTGACTGCAAGATGCCTTAAGGGTGTAGAACAAGAGAAAA
AGGAACTGAGGCACCTCACGGAGTCCTTGCAGCAGACACTGGAGGAACTCTCCATAGAGAAGAAGAAAAC
CCTGGAAATGCTGGAGGAGAACGAGAACCACCTGCAGACACTGGCCAATCAGAGTGAGCAGCCCCCTCCC
AGTGGGGGCCTCCATAGCAACCTCCGGCAGATCGAGGAGAAGATGCAGCAGCTCTTAGAGGAGAAGCTCC
TGGCAGAGAAGCGGATGAAGGAGAACGAGGAGCGCTCACGGGCCCTGGAGGAGGAGCGTGAGTTCTACTC
CAGCCAGTCCCAGGCACTGCAGAACTCGCTGCAGGAGCTGACGGCAGAGAAGCAGCAGGCTGAGCGGGAG
CTCAAGGCTGAGGTGAAGGTCCGCATGGACCTGGAGAGGCGTCTCCGGGAGGCAGAAGGGGCCTTGCGAA
GCCTGGAACAGGGGCTGAATTCCAAGGTGCGGAATAAGGAGAAGGAGGAGAGGATGCGGGCTGATGTGAG
CCATCTGAAAAGGTTCTTTGAGGAGTGCATCCGGAATGCCGAGCTGGAGGCCAAGATGCCTGTGATCATG
AAGAACTCCGTGTACATCCATAAGGCAGCCACTCGCCGCATCAAGAGCTGCCGCTTCCACCGACGCCGGT
CCAGCACCTCCTGGAATGACATGAAGCCGTCCCAGTCCTTCATGACCTCCCAGCTGGATGCCAACAACAT
GGAGGAGCTAAAGGAGGTGGCCAAGCGGCTCAGCAGGGACCAGCGCTTCCGGGAATCCATCTACCACATC
ATGGCCACCCAGCCTGGAGCCCCCTCGGCACTCTCCCGGGGTGGAAAGTGA

Translation (506 aa):
MFTSKSNSVSPSPSLEQADSDALDISTKVQLYGVLWKRPFGRPSAKWSRRFFIIKESFLLYYSESEKKSF
ETNKYFNIHPKGVIPLGGCLVEPKEEPSMPYAMKISHQDFHGNILLAAESEFEQTQWLEMLQESGKVTWK
NAQLGEAMIKSLEAQGLQLAKEKQEYLDKLMEETEELCLQREQREELERLNQVLEAEKQQFEEVVQELRM
EQEQIKRELELTARCLKGVEQEKKELRHLTESLQQTLEELSIEKKKTLEMLEENENHLQTLANQSEQPPP
SGGLHSNLRQIEEKMQQLLEEKLLAEKRMKENEERSRALEEEREFYSSQSQALQNSLQELTAEKQQAERE
LKAEVKVRMDLERRLREAEGALRSLEQGLNSKVRNKEKEERMRADVSHLKRFFEECIRNAELEAKMPVIM
KNSVYIHKAATRRIKSCRFHRRRSSTSWNDMKPSQSFMTSQLDANNMEELKEVAKRLSRDQRFRESIYHI
MATQPGAPSALSRGGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH