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Report for CCDS53976.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53976.1 Public Homo sapiens 15 MCTP2 24 110 108 CCDS HistoryNCBI Gene:55784Re-query CCDS DB by CCDS ID:53976.1Re-query CCDS DB by GeneID:55784See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53976.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000557742.1 ENSP00000454847.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000557742.1Link to Ensembl Protein Viewer:ENSP00000454847.1Re-query CCDS DB by Nucleotide ID:ENST00000557742Re-query CCDS DB by Protein ID:ENSP00000454847
Original member Current member NCBI NM_001159644.2 NP_001153116.1 Accepted alive Link to Nucleotide Sequence:NM_001159644.2Link to Protein Sequence:NP_001153116.1Re-query CCDS DB by Nucleotide ID:NM_001159644Re-query CCDS DB by Protein ID:NP_001153116Link to BLAST:NP_001153116.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153116.1 306 Q6DN12-4 306 100% 0 0

Chromosomal Locations for CCDS 53976.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 94358548 94358612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94367605 94367791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94370087 94370180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94384022 94384124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94385423 94385525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94398961 94399062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94399921 94399995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94401900 94402019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 94402486 94402557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGGGCATTTTGGACATTGAAGTGTGGGGAAAGGACAACAAAAAGCATGAGGAACGTCTGGGCACGTGTA
AAGTGGATATCTCGGCACTCCCTCTGAAGCAAGCCAACTGCCTGGAGCTGCCACTGGACAGCTGTCTGGG
GGCTCTCCTTATGTTGGTCACACTTACACCCTGTGCGGGGGTCTCCGTCTCTGATCTGTGTGTCTGCCCC
TTAGCAGACCTCAGCGAAAGAAAGCAGATTACCCAGCGATATTGCTTACAGAACTCCCTGAAAGATGTGA
AAGACGTCGGCATTCTACAAGTGAAGGTTTTAAAGGCAGCAGATCTCTTAGCGGCAGATTTCTCAGGGAA
GAGTGACCCATTTTGCTTGTTGGAGTTAGGCAATGACCGACTTCAGACGCATACCGTCTACAAAAACCTC
AACCCTGAATGGAACAAAGTTTTTACATTTCCCATTAAAGATATCCATGATGTTTTGGAAGTGACAGTGT
TTGATGAAGATGGAGATAAACCCCCAGATTTTCTTGGAAAAGTTGCCATTCCCTTGCTGTCCATTAGAGA
TGGACAACCGAATTGTTATGTACTAAAGAATAAAGATTTAGAACAAGCTTTTAAAGGAGTTATTTACTTA
GAGATGGACCTTATATATAATCCGGTGAAAGCAAGTATTAGGACTTTTACTCCCCGGGAAAAGCGCTTTG
TTGAAGACAGCCGCAAGCTGTCCAAAAAGATCTTATCAAGAGATGTGGACCGTGTGAAAAGAATCACTAT
GGCAATATGGAATACAATGCAGTTCCTTAAAAGCTGCTTCCAGTGGGAATCCACATTAAGAAGTACAATA
GCATTCGCGCACCGCAAAGAGGAACCACCCCTGTCTATGAAATGTACCCTTTTCTCTGGTGACATTGGCC
CATCCTTATGA

Translation (306 aa):
MGILDIEVWGKDNKKHEERLGTCKVDISALPLKQANCLELPLDSCLGALLMLVTLTPCAGVSVSDLCVCP
LADLSERKQITQRYCLQNSLKDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNL
NPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYL
EMDLIYNPVKASIRTFTPREKRFVEDSRKLSKKILSRDVDRVKRITMAIWNTMQFLKSCFQWESTLRSTI
AFAHRKEEPPLSMKCTLFSGDIGPSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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