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Report for CCDS53983.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53983.1 Public Homo sapiens 16 MEIOB 24 110 108 CCDS HistoryNCBI Gene:254528Re-query CCDS DB by CCDS ID:53983.1Re-query CCDS DB by GeneID:254528See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53983.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000325962.9 ENSP00000314484.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000325962.9Link to Ensembl Protein Viewer:ENSP00000314484.3Re-query CCDS DB by Nucleotide ID:ENST00000325962Re-query CCDS DB by Protein ID:ENSP00000314484
Original member Current member NCBI NM_001163560.3 NP_001157032.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001163560.3Link to Protein Sequence:NP_001157032.1Re-query CCDS DB by Nucleotide ID:NM_001163560Re-query CCDS DB by Protein ID:NP_001157032Link to BLAST:NP_001157032.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157032.1 471 Q8N635-2 471 100% 0 0

Chromosomal Locations for CCDS 53983.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 1834256 1834366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1837784 1837870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1839255 1839438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1841820 1841973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1844862 1844963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1853039 1853134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1853219 1853271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1854100 1854200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1857735 1857930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1860403 1860475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1861985 1862116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1865778 1865835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1868107 1868175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1416 nt):
ATGGCAAACTCCTTTGCAGCGAGGATTTTCACTACCCTTTCAGATCTGCAGACAAATATGGCTAATCTGA
AAGTTATCGGTATAGTTATTGGGAAAACAGATGTCAAAGGCTTTCCAGACAGAAAAAATATTGGATCAGA
AAGGTACACTTTCAGCTTCACCATTCGGGATTCACCAGCACATTTTGTAAATGCAGCTTCCTGGGGCAAT
GAAGATTACATCAAGTCTCTTTCTGACAGCTTTAGGGTTGGTGACTGTGTGATAATTGAAAATCCTCTGA
TCCAAAGAAAGGAAATAGAAAGAGAAGAAAAATTCAGCCCTGCAACTCCTAGCAACTGTAAACTGTTGCT
CAGTGAGAATCACTCAACAGTAAAAGTTTGTTCCAGTTATGAAGTGGACACAAAGTTACTTTCTTTGATA
CATTTACCTGTTAAAGAGTCTCATGATTATTATTCACTGGGTGACATTGTTGCAAATGGACACAGTCTTA
ATGGGAGGATTATTAACGTGCTTGCAGCTGTGAAATCGGTTGGAGAGCCAAAATACTTTACAACTTCAGA
CCGGAGAAAAGGCCAGAGGTGTGAAGTTAGACTCTATGATGAAACAGAGTCGTCTTTTGCGATGACATGT
TGGGATAATGAATCCATTCTACTTGCACAGAGCTGGATGCCACGAGAAACAGTAATATTTGCCTCAGATG
TAAGAATAAATTTTGACAAATTTCGGAACTGCATGACAGCAACTGTAATCTCAAAAACCATTATTACAAC
TAATCCAGATATACCAGAAGCTAACATTCTGCTGAATTTTATACGAGAAAATAAAGAAACGAATGTTCTG
GATGATGAAATTGACAGTTATTTCAAAGAATCCATAAATTTAAGTACAATAGTTGATGTCTACACAGTTG
AACAATTAAAGGGAAAAGCTTTGAAGAATGAAGGAAAAGCTGATCCTTCCTATGGCATCCTTTATGCCTA
CATTTCCACACTCAACATTGATGATGAAACTACAAAAGTAGTTCGAAATAGATGTTCCAGCTGTGGTTAT
ATTGTAAATGAAGCATCTAACATGTGCACAACTTGCAACAAAAACTCCTTGGACTTTAAATCTGTCTTTC
TCAGTTTCCATGTGCTGATTGATCTGACTGATCACACAGGCACCCTTCATTCCTGTAGTCTCACAGGAAG
TGTTGCTGAGGAGACTTTGGGCTGCACGGTACATGAGTTTCTTGCAATGACAGATGAACAGAAAACAGCA
TTAAAGTGGCAATTTCTCTTGGAAAGAAGCAAAATTTATTTAAAATTCGTTCTATCACACAGAGCAAGGA
GTGGATTGAAAATTAGTGTACTCTCGTGCAAGCTTGCAGATCCTACTGAGGCAAGCAGAAACTTGTCTGG
ACAAAAACATGTTTAA

Translation (471 aa):
MANSFAARIFTTLSDLQTNMANLKVIGIVIGKTDVKGFPDRKNIGSERYTFSFTIRDSPAHFVNAASWGN
EDYIKSLSDSFRVGDCVIIENPLIQRKEIEREEKFSPATPSNCKLLLSENHSTVKVCSSYEVDTKLLSLI
HLPVKESHDYYSLGDIVANGHSLNGRIINVLAAVKSVGEPKYFTTSDRRKGQRCEVRLYDETESSFAMTC
WDNESILLAQSWMPRETVIFASDVRINFDKFRNCMTATVISKTIITTNPDIPEANILLNFIRENKETNVL
DDEIDSYFKESINLSTIVDVYTVEQLKGKALKNEGKADPSYGILYAYISTLNIDDETTKVVRNRCSSCGY
IVNEASNMCTTCNKNSLDFKSVFLSFHVLIDLTDHTGTLHSCSLTGSVAEETLGCTVHEFLAMTDEQKTA
LKWQFLLERSKIYLKFVLSHRARSGLKISVLSCKLADPTEASRNLSGQKHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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