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Report for CCDS54.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
54.1 |
Public |
Homo sapiens |
1 |
AJAP1 |
24 |
110 |
108 |
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Public Note for CCDS 54.1 |
This CCDS ID represents the protein described in PMIDs: 14595118 and 17267690. This protein is encoded by two different splice variants that are supported by AF175409.1 and AL049673.1. It should be noted that this transcript is predicted to undergo nonsense-mediated mRNA decay (NMD). However, the protein is represented because it was detected endogenously in PMID: 14595118. It is likely that the majority of transcripts representing this variant will undergo NMD, while some low level of NMD escape may allow for the expression of this protein. |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)
Attributes |
Nonsense-mediated decay (NMD) candidate |
Sequence IDs included in CCDS 54.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
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EBI |
ENST00000378190.7 |
ENSP00000367432.3 |
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Accepted |
alive |
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EBI |
ENST00000378191.5 |
ENSP00000367433.3 |
MANE Select |
Accepted |
alive |
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NCBI |
NM_001042478.2 |
NP_001035943.1 |
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Accepted |
alive |
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NCBI |
NM_018836.4 |
NP_061324.1 |
MANE Select |
Accepted |
alive |
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Chromosomal Locations for CCDS 54.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1236 nt): ATGTGGATTCAACAGCTTTTAGGACTCAGCTCCATGTCCATCCGCTGGCCGGGCCGCCCCCTCGGAAGCC ATGCCTGGATACTGATAGCCATGTTTCAGCTCGCCGTGGACCTGCCCGCCTGTGAGGCCCTGGGCCCGGG GCCGGAGTTCTGGCTCCTGCCGCGGTCGCCGCCCCGGCCGCCCCGGCTGTGGAGTTTTAGGAGTGGACAG CCAGCGCGGGTCCCGGCCCCGGTGTGGAGCCCCCGGCCGCCCCGAGTGGAGCGGATCCACGGGCAGATGC AGATGCCTCGAGCCAGACGGGCCCACAGGCCCCGGGACCAGGCGGCCGCCCTCGTGCCCAAGGCAGGACT GGCCAAGCCCCCAGCTGCTGCCAAATCCAGCCCTTCCCTCGCCTCTTCGTCCTCGTCCTCGTCCTCCGCG GTGGCCGGTGGGGCCCCGGAGCAGCAGGCCCTCCTGAGGAGGGGCAAGAGGCACCTGCAGGGGGACGGTC TCAGCAGCTTCGACTCCAGAGGCAGCCGGCCCACCACAGAGACTGAGTTCATCGCCTGGGGGCCCACGGG GGACGAGGAGGCCCTGGAGTCCAACACATTTCCGGGCGTTTACGGCCCCACCACGGTCTCCATCCTACAA ACACGGAAGACAACTGTGGCCGCCACCACCACCACCACCACCACGGCCACCCCCATGACGCTGCAGACTA AGGGGTTCACCGAGTCCTTGGATCCCCGGAGAAGGATCCCAGGTGGGGTTAGCACAACGGAGCCTTCCAC CAGTCCCAGCAACAACGGGGAAGTCACCCAGCCCCCAAGGATTCTGGGGGAGGCCTCAGGTCTGGCTGTC CATCAGATCATCACCATCACCGTCTCCCTCATCATGGTCATAGCTGCTCTCATCACAACTCTTGTCTTAA AAAATTGCTGTGCCCAAAGCGGGAACACTCGTCGGAACAGCCACCAGCGGAAGACCAACCAGCAGGAGGA GAGCTGCCAGAACCTCACGGACTTCCCCTCGGCCCGGGTGCCCAGCAGCCTGGACATATTCACGGCCTAT AACGAGACCCTGCAGTGTTCTCACGAGTGCGTCAGGGCATCTGTGCCCGTGTACACCGATGAGACGCTGC ACTCGACGACGGGGGAGTACAAATCCACATTTAATGGAAACCGACCCTCCTCTTCTGATCGGCATCTTAT TCCTGTGGCCTTCGTGTCTGAGAAATGGTTTGAAATCTCCTGCTGA
Translation (411 aa): MWIQQLLGLSSMSIRWPGRPLGSHAWILIAMFQLAVDLPACEALGPGPEFWLLPRSPPRPPRLWSFRSGQ PARVPAPVWSPRPPRVERIHGQMQMPRARRAHRPRDQAAALVPKAGLAKPPAAAKSSPSLASSSSSSSSA VAGGAPEQQALLRRGKRHLQGDGLSSFDSRGSRPTTETEFIAWGPTGDEEALESNTFPGVYGPTTVSILQ TRKTTVAATTTTTTTATPMTLQTKGFTESLDPRRRIPGGVSTTEPSTSPSNNGEVTQPPRILGEASGLAV HQIITITVSLIMVIAALITTLVLKNCCAQSGNTRRNSHQRKTNQQEESCQNLTDFPSARVPSSLDIFTAY NETLQCSHECVRASVPVYTDETLHSTTGEYKSTFNGNRPSSSDRHLIPVAFVSEKWFEISC
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