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Report for CCDS54028.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54028.1 Public Homo sapiens 16 RIPOR1 24 110 108 CCDS HistoryNCBI Gene:79567Re-query CCDS DB by CCDS ID:54028.1Re-query CCDS DB by GeneID:79567See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54028.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379312.7 ENSP00000368614.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379312.7Link to Ensembl Protein Viewer:ENSP00000368614.3Re-query CCDS DB by Nucleotide ID:ENST00000379312Re-query CCDS DB by Protein ID:ENSP00000368614
Original member Current member NCBI NM_001193522.2 NP_001180451.1 Accepted alive Link to Nucleotide Sequence:NM_001193522.2Link to Protein Sequence:NP_001180451.1Re-query CCDS DB by Nucleotide ID:NM_001193522Re-query CCDS DB by Protein ID:NP_001180451Link to BLAST:NP_001180451.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180451.1 1223 Q6ZS17-1 1223 100% 0 0

Chromosomal Locations for CCDS 54028.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 67538447 67538550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67538660 67538824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67538990 67539068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67539728 67539751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67539846 67539899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67540053 67540205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67540300 67540363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67540458 67540501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67540579 67540704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67541430 67541578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67541653 67541782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67541867 67543264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67543348 67543469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67544299 67544431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67544695 67544830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67544956 67545117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67545376 67545534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67545664 67545860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67545949 67546032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67546141 67546231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67546366 67546463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3672 nt):
ATGATGTCCCTGTCGGTGCGGCCGCAGCGCCGTCTGCTCAGCGCCCGGGTCAATAGGAGCCAGTCCTTCG
CAGGCGTCCTCGGCAGCCACGAGCGGGGGCCCAGCCTCTCCTTCAGGAGTTTCCCGGTCTTCAGCCCGCC
GGGGCCCCCACGGAAGCCCCCCGCGCTCTCCCGAGTGTCCAGGATGTTTTCCGTGGCTCACCCAGCCGCC
AAGGTGCCGCAGCCCGAGCGGCTGGACCTGGTGTACACGGCGCTGAAGCGGGGCCTGACGGCCTACTTGG
AAGTGCACCAGCAGGAGCAAGAGAAACTCCAGGGGCAGATAAGGGAGTCCAAGAGGAATTCCCGCTTGGG
CTTCCTGTATGATCTGGACAAGCAAGTCAAGTCCATTGAACGCTTCCTGCGACGACTGGAGTTCCATGCC
AGCAAGATCGATGAGCTGTATGAGGCATACTGTGTCCAGCGGCGTCTCCGGGATGGTGCCTACAACATGG
TCCGTGCCTACACCACTGGGTCCCCGGGAAGCCGAGAGGCCCGGGACAGCCTGGCAGAGGCCACTCGGGG
GCATCGCGAGTACACGGAGAGCATGTGTCTGCTGGAGAGCGAGCTGGAGGCACAGCTGGGCGAGTTTCAT
CTCCGAATGAAAGGGCTGGCTGGCTTCGCCAGGCTGTGTGTAGGCGATCAGTATGAGATCTGCATGAAAT
ATGGGCGTCAGCGCTGGAAACTACGGGGCCGAATTGAGGGTAGTGGAAAGCAGGTGTGGGACAGTGAAGA
AACCATCTTTCTCCCTCTACTCACGGAATTTCTGTCTATTAAGGTGACAGAACTGAAGGGCCTGGCCAAC
CATGTGGTTGTGGGCAGTGTCTCCTGTGAGACCAAGGACCTGTTTGCCGCCCTGCCCCAGGTTGTGGCTG
TGGATATCAATGACCTTGGTACCATCAAGCTCAGCCTGGAAGTCACATGGAGCCCCTTCGACAAGGATGA
CCAGCCCTCAGCTGCTTCTTCTGTCAACAAGGCCTCCACAGTCACCAAGCGCTTCTCCACCTATAGCCAG
AGCCCACCGGACACACCCTCACTTCGGGAACAGGCTTTCTATAACATGCTGCGACGGCAGGAGGAGCTGG
AGAATGGGACAGCATGGTCCCTGTCATCTGAATCTTCAGACGACTCATCCAGCCCACAGCTCTCAGGCAC
TGCCCGCCACTCACCAGCCCCTAGGCCCCTGGTGCAGCAGCCCGAGCCCCTTCCCATCCAAGTTGCCTTC
CGCAGGCCTGAGACCCCCAGCTCTGGGCCCTTGGATGAGGAGGGGGCCGTGGCCCCAGTCCTGGCAAATG
GGCATGCACCCTACAGTCGGACTCTGAGCCACATCAGTGAGGCTAGTGTAGATGCTGCCTTGGCTGAGGC
TTCAGTGGAGGCCGTTGGCCCAGAAAGCCTAGCCTGGGGACCTAGCCCACCTACACACCCAGCTCCCACC
CATGGAGAGCACCCCAGTCCTGTTCCTCCTGCCCTGGACCCTGGCCACTCTGCCACAAGCTCTACCCTCG
GTACAACAGGCTCTGTCCCCACATCTACAGACCCTGCCCCATCTGCACACCTAGACTCAGTTCATAAGTC
CACAGACTCTGGCCCTTCAGAACTGCCAGGCCCCACTCACACCACTACAGGCTCTACCTATAGTGCCATT
ACCACTACCCACAGTGCTCCAAGCCCCCTCACTCACACTACTACAGGCTCCACCCACAAGCCCATAATCT
CTACCCTTACTACTACAGGCCCTACCCTCAATATCATAGGCCCAGTCCAGACTACCACAAGCCCCACCCA
CACTATGCCAAGCCCTACCCATACCACAGCAAGCCCCACTCATACTTCCACAAGCCCCACCCATACCCCC
ACAAGTCCCACCCACAAAACCAGTATGTCACCTCCCACCACTACAAGTCCTACCCCCAGTGGTATGGGCC
TAGTCCAGACTGCCACAAGTCCCACCCATCCTACCACAAGCCCCACCCATCCCACCACAAGCCCCATCCT
TATAAATGTAAGCCCTTCCACTTCTCTAGAACTTGCTACCCTCTCCAGCCCCTCCAAACACTCAGACCCC
ACCCTCCCAGGCACTGACTCCCTTCCCTGTAGTCCCCCAGTCTCCAATTCCTACACTCAGGCAGACCCTA
TGGCCCCCAGAACTCCCCACCCAAGTCCTGCCCATTCCAGTAGGAAACCCCTCACAAGCCCTGCCCCAGA
TCCCTCAGAGTCTACGGTTCAGAGTCTAAGCCCCACTCCCTCACCCCCAACCCCTGCACCCCAGCATTCA
GACCTTTGCCTGGCCATGGCTGTCCAGACCCCAGTCCCAACGGCAGCCGGAGGGTCTGGGGACAGGAGCC
TGGAGGAGGCACTGGGGGCCCTAATGGCTGCCCTGGATGACTACCGTGGCCAGTTTCCTGAGCTGCAGGG
CCTGGAGCAGGAGGTGACCCGCCTAGAAAGTCTGCTCATGCAGAGACAAGGTCTGACTCGCAGCCGGGCC
TCCAGTCTCAGCATCACTGTGGAGCATGCCTTGGAGAGCTTCAGCTTCCTCAATGAAGACGAAGATGAAG
ACAATGATGTTCCTGGGGACAGGCCTCCAAGCAGCCCGGAGGCTGGGGCTGAGGACAGCATAGACTCACC
CAGTGCCCGCCCCCTCAGCACGGGGTGTCCAGCTCTGGATGCTGCCTTGGTCCGGCACCTGTACCACTGC
AGTCGCCTCCTGCTGAAACTGGGCACATTTGGGCCCCTGCGCTGCCAGGAGGCATGGGCCCTGGAGCGGC
TGCTGCGGGAAGCCCGAGTACTGGAGGCAGTATGCGAGTTCAGCAGGCGGTGGGAGATCCCGGCCAGCTC
TGCCCAGGAAGTGGTGCAGTTCTCGGCCTCTCGGCCTGGCTTCCTGACCTTCTGGGACCAGTGCACAGAG
AGACTCAGCTGCTTCCTCTGCCCGGTGGAGCGGGTGCTTCTCACCTTCTGCAACCAGTATGGTGCCCGCC
TCTCCCTGCGCCAGCCAGGCTTGGCTGAGGCTGTGTGTGTGAAGTTCCTGGAGGATGCCCTGGGGCAGAA
GCTGCCCAGAAGGCCCCAGCCAGGGCCTGGAGAGCAGCTCACAGTCTTCCAGTTCTGGAGTTTTGTGGAA
ACCTTGGACAGCCCCACCATGGAGGCCTACGTGACTGAGACCGCTGAGGAGGTGCTACTGGTGCGGAATC
TGAACTCGGATGATCAGGCTGTTGTGCTGAAGGCCCTGAGATTGGCGCCCGAGGGGCGTCTGCGAAGGGA
CGGGCTGCGGGCCCTCAGCTCCCTGCTCGTCCATGGCAACAACAAGGTCATGGCTGCTGTCAGCACCCAG
CTCCGGAGCCTGTCACTGGGCCCTACCTTCCGGGAGAGGGCCCTCCTGTGCTTCCTGGACCAGCTGGAGG
ATGAGGACGTGCAGACTCGAGTGGCTGGCTGCCTGGCCCTAGGCTGCATCAAGGCTCCCGAGGGCATTGA
GCCCCTGGTGTACCTCTGCCAAACTGACACAGAAGCTGTGAGGGAAGCTGCCCGGCAAAGCCTACAGCAG
TGTGGAGAAGAGGGACAGTCTGCCCATCGACGGCTGGAGGAGTCCCTGGACGCCCTGCCCCGCATCTTTG
GGCCTGGCAGCATGGCCAGCACAGCATTCTAA

Translation (1223 aa):
MMSLSVRPQRRLLSARVNRSQSFAGVLGSHERGPSLSFRSFPVFSPPGPPRKPPALSRVSRMFSVAHPAA
KVPQPERLDLVYTALKRGLTAYLEVHQQEQEKLQGQIRESKRNSRLGFLYDLDKQVKSIERFLRRLEFHA
SKIDELYEAYCVQRRLRDGAYNMVRAYTTGSPGSREARDSLAEATRGHREYTESMCLLESELEAQLGEFH
LRMKGLAGFARLCVGDQYEICMKYGRQRWKLRGRIEGSGKQVWDSEETIFLPLLTEFLSIKVTELKGLAN
HVVVGSVSCETKDLFAALPQVVAVDINDLGTIKLSLEVTWSPFDKDDQPSAASSVNKASTVTKRFSTYSQ
SPPDTPSLREQAFYNMLRRQEELENGTAWSLSSESSDDSSSPQLSGTARHSPAPRPLVQQPEPLPIQVAF
RRPETPSSGPLDEEGAVAPVLANGHAPYSRTLSHISEASVDAALAEASVEAVGPESLAWGPSPPTHPAPT
HGEHPSPVPPALDPGHSATSSTLGTTGSVPTSTDPAPSAHLDSVHKSTDSGPSELPGPTHTTTGSTYSAI
TTTHSAPSPLTHTTTGSTHKPIISTLTTTGPTLNIIGPVQTTTSPTHTMPSPTHTTASPTHTSTSPTHTP
TSPTHKTSMSPPTTTSPTPSGMGLVQTATSPTHPTTSPTHPTTSPILINVSPSTSLELATLSSPSKHSDP
TLPGTDSLPCSPPVSNSYTQADPMAPRTPHPSPAHSSRKPLTSPAPDPSESTVQSLSPTPSPPTPAPQHS
DLCLAMAVQTPVPTAAGGSGDRSLEEALGALMAALDDYRGQFPELQGLEQEVTRLESLLMQRQGLTRSRA
SSLSITVEHALESFSFLNEDEDEDNDVPGDRPPSSPEAGAEDSIDSPSARPLSTGCPALDAALVRHLYHC
SRLLLKLGTFGPLRCQEAWALERLLREARVLEAVCEFSRRWEIPASSAQEVVQFSASRPGFLTFWDQCTE
RLSCFLCPVERVLLTFCNQYGARLSLRQPGLAEAVCVKFLEDALGQKLPRRPQPGPGEQLTVFQFWSFVE
TLDSPTMEAYVTETAEEVLLVRNLNSDDQAVVLKALRLAPEGRLRRDGLRALSSLLVHGNNKVMAAVSTQ
LRSLSLGPTFRERALLCFLDQLEDEDVQTRVAGCLALGCIKAPEGIEPLVYLCQTDTEAVREAARQSLQQ
CGEEGQSAHRRLEESLDALPRIFGPGSMASTAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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