NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5403.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5403.1 Public Homo sapiens 7 HOXA2 24 110 108 CCDS HistoryNCBI Gene:3199Re-query CCDS DB by CCDS ID:5403.1Re-query CCDS DB by GeneID:3199See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5403.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000222718.7 ENSP00000222718.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000222718.7Link to Ensembl Protein Viewer:ENSP00000222718.5Re-query CCDS DB by Nucleotide ID:ENST00000222718Re-query CCDS DB by Protein ID:ENSP00000222718
Original member Current member NCBI NM_006735.4 NP_006726.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006735.4Link to Protein Sequence:NP_006726.1Re-query CCDS DB by Nucleotide ID:NM_006735Re-query CCDS DB by Protein ID:NP_006726Link to BLAST:NP_006726.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006726.1 376 O43364 376 100% 0 0

Chromosomal Locations for CCDS 5403.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27100726 27101465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27102110 27102500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGAATTACGAATTTGAGCGAGAGATTGGTTTTATCAATAGCCAGCCGTCGCTCGCTGAGTGCCTGACAT
CTTTTCCCCCTGTCGCTGATACATTTCAAAGTTCATCAATCAAGACCTCGACGCTTTCACACTCGACACT
GATTCCTCCTCCTTTTGAGCAGACCATTCCCAGCCTGAACCCCGGCAGTCACCCTCGCCACGGCGCTGGC
GGCCGCCCCAAGCCGAGCCCCGCGGGCAGCCGCGGCAGCCCGGTGCCCGCCGGCGCCCTGCAGCCGCCCG
AGTACCCCTGGATGAAGGAGAAGAAGGCGGCCAAGAAAACCGCACTTCTGCCGGCCGCCGCCGCCGCCGC
CACCGCCGCAGCCACCGGCCCTGCTTGCCTCAGCCACAAAGAATCCCTGGAAATCGCCGATGGCAGCGGC
GGGGGATCGCGGCGCCTGAGAACTGCTTACACCAACACACAGCTTCTAGAGCTGGAAAAAGAATTTCATT
TCAACAAGTACCTTTGCAGACCCCGAAGGGTGGAGATTGCAGCGCTGCTGGATTTGACTGAGAGACAAGT
GAAAGTGTGGTTTCAGAACCGGAGGATGAAGCACAAGAGGCAGACCCAGTGCAAGGAAAACCAAAACAGC
GAAGGGAAATGTAAAAGCCTTGAGGACTCCGAGAAAGTAGAGGAGGACGAGGAAGAGAAGACGCTCTTTG
AGCAAGCCCTTAGCGTCTCTGGGGCCCTTCTGGAGAGGGAAGGCTACACTTTTCAGCAAAATGCCCTCTC
TCAGCAGCAGGCTCCCAATGGACACAATGGCGACTCCCAAAGTTTCCCAGTCTCGCCTTTAACCAGCAAT
GAGAAAAATCTGAAACATTTTCAGCACCAGTCACCCACTGTTCCCAACTGCTTGTCAACAATGGGCCAGA
ACTGTGGAGCTGGCCTAAACAATGACAGTCCTGAGGCCCTTGAGGTCCCCTCTTTGCAGGACTTTAGCGT
TTTCTCCACAGATTCCTGCCTGCAGCTTTCAGATGCAGTTTCACCCAGTTTGCCAGGTTCCCTCGACAGT
CCCGTAGATATTTCAGCTGACAGCTTAGACTTTTTTACAGACACACTCACCACAATCGACTTGCAGCATC
TGAATTACTAA

Translation (376 aa):
MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSHPRHGAG
GRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKESLEIADGSG
GGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNS
EGKCKSLEDSEKVEEDEEEKTLFEQALSVSGALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSN
EKNLKHFQHQSPTVPNCLSTMGQNCGAGLNNDSPEALEVPSLQDFSVFSTDSCLQLSDAVSPSLPGSLDS
PVDISADSLDFFTDTLTTIDLQHLNY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH