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Report for CCDS54103.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54103.1 Public Homo sapiens 17 EFCAB5 24 110 108 CCDS HistoryNCBI Gene:374786Re-query CCDS DB by CCDS ID:54103.1Re-query CCDS DB by GeneID:374786See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54103.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000536908.6 ENSP00000440619.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536908.6Link to Ensembl Protein Viewer:ENSP00000440619.2Re-query CCDS DB by Nucleotide ID:ENST00000536908Re-query CCDS DB by Protein ID:ENSP00000440619
Original member Current member NCBI NM_001145053.2 NP_001138525.2 Accepted alive Link to Nucleotide Sequence:NM_001145053.2Link to Protein Sequence:NP_001138525.2Re-query CCDS DB by Nucleotide ID:NM_001145053Re-query CCDS DB by Protein ID:NP_001138525Link to BLAST:NP_001138525.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138525.2 856 A4FU69-5 856 100% 0 0

Chromosomal Locations for CCDS 54103.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 29943628 29943649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29968791 29969367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29993165 29993321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29996312 29996360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29999906 29999976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30034230 30034385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30051118 30051217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30053255 30054148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30055888 30055965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30056064 30056156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30057676 30057890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30073083 30073198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30073648 30073690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2571 nt):
ATGGATGAAATCAAATCCCAAGAATTAAACCTGGAGGGGCAGCGAAAAATTTCACCTGGTTCAATAAAGG
ACTCTAAAACTGAAGCCTCAGGTAATATTGCAATTAGAAAATCTGCAAAAGTGATTTTTGCTTTAGATGA
AACTGAACTGAAATCAAAGCCAGAGCACACATGGAAGAAAAACCTTTTTGAAAGAATGGAGGCAAGAGCC
CAAGCAATGCAGCAGAAAATAATAGATAAGGAAAATCTGAAGAAGGAACTAGAAAAAAAGGCTGAAAAAA
AACTCCCTAGGGATAATTTGGCCAAAGAGTGGTTTAATACTGACAGCATGACACTGAATAATACTGCATA
TTTGCTTGACAAACTTCTACCCACCTTAGTTCCTGGAGTAGAAAACATGTTAACTCAAGTAGAAAAGAAG
AAGGTTTTGACAGAAGCTGATACTCCAAGCAAGTTTGACCCAATTAATTATTTGGGGGAATATTTAATAA
GAAACAATCCTAATTATATCAAAGACCCAGGAATGTCTGGTTACCAGAGGTTGATGAAAGAAGTCACAGA
AGACCTGAAGATATATGTTCCTGACACTATCTGCAACAGAGTATCCAAGATGAAGGAGAATGTTAAACAG
AATAGAAAACAAAGAGAAAGCATAGACAAAATCATAGTCAAGGTGGCCAACACACGGAAACAGGCTCTGC
AGGAGCAATTCGATGAATGGATTCTAGACCCTAAAGGAATGATTCCTAAGTCAGTGATTCAGAATGTTCT
TCAAGAATTCTTTCAAAATCCAGATTTCAAGCTTGGATCACACTGCAAACAACTGGATATTACTGACTCA
ACAGAACCAAGATTGAACAAAATGGAATTTACAGAATACATCTCTTCACATATTAAAGACTTGAAGAGTG
AAATGTTTGAGGAACTTCTTAAGCACCTTTGCCACTCTGCAGATGAATTTCGGGAGGTCATAAAAGCTGA
CATGCGGAGGCAGATGTTCGCTGAACTCTTCCTACATTGTGACCACGGGAAGGTAGGGTTTTTGGATCGG
CAGAGGACATTGGCCCTGCTGGAATTGTTCTATGACCATAGTTCACAAATGCTTAGGAGTTTACTTCGAA
ACCCACGACAATGGCCATTCATTGAATTTGAAGAGATAAACTTGACTGAGTTGTGGGGAGACATGGATAA
TCAGAAACACATTTATGAAGGTTTTGACAAAGTGCTCTTGGAGATGAATACATTACTTTCTGCAAATCAT
GCTAGCAAAACCCAAAGTAAATTATTAGAAAGTCCAGATCAACCTAAACTTAACGAACAGAGAACATCAA
CACCATCACCAAACCCGCCAGAACAGCAGAGAGGAGTAACTGCAGAACAAGGACCACAAAGAATTTCAAT
TGAAGAACAACAACAAGGCAAAAAGCCAACTGCAGAGCAAGAACTGTACATAGAATCAGTAATAGAACCA
GGAACACACACAGAGTCAACTCTAGAACAAGGGTCAAGTAGAAGGTTACTGACAGAACAAGAAACACACA
GAGAGTCAACTACAGAACAAGGACAGCACAAAGGGTCAATAGAAGGACAAGGACCACGCAGAGTGTCAGT
TTCAGAACAAGGATCAAGCAGAGAGTCAGTTGCAGAACAAGGGTCACGCAGAGAGTCTATTGCAGAACAA
GATCGACACAAAGGGTCAGTAGCAGAACAAGGATCACGCAGAATGTCAGCTGCAGAACAGGGATCACTCA
GAGAGTCAGTAATAGAAGAACCATACCAAAAATCAGAACAAGGACCTTATGGAGAGATAATTTCAGAAGA
GCAAGAAGACATAGGCTCAACTTCACAATCAAGAAAAGATAGTATCTTAAAAAGTACAAAATATGGGGAA
CCTATAACCTCTGAGTACATTGAAGTCCCTCTACAGGAAAAGAGGTCTTGGGAACAAACATATGAAGAGG
AAATATTCCTGAGTTCTGAACTGCAAGAGGAAGTTCCAACCTTAAGCAGAAAAGATCACTTTCCAGAAAC
TACAAAAAAGGAAGTTCAGAAAGACAAGCCCTGTGAACCCAAGTCCCAAAAAATAGAAGGAAAGTCATGG
TCAGGTGAATTTTTTACTTGTAACTGGAAAATGAAGTATGTCACATTTGAAGATGAGGAACAGGCAAACT
TAATCTATGGTAACTCCAGGTTCACAGATTTACACTCAATTATCAGAAATATTCAGTCTTGCAAGGAGGT
AAAAGGCAGAACTGCCTTCAATGGAGTTTCATTCAATCTGCTCCAGTTTGTGCAACTCCTGGAGACATTT
GTTGGTGAAGACGCTCCCTTGAGTGTCAGCGAGACTCTCACCTCCTTTTTTAAGGAGGGCTATGTTGAAA
CAGAACAAGAGAAAATGAATGCCTTAGAACAGGTCTCACTCTGTCGCCAGGCTGGAGTGCAGTGGCGCAA
CTGTAGCTCACTGCAGCCTCCAACTCCCGGACTCAAGCGATCATCCCATCACAGACTCCTGAGCAACTGG
GACTACAGGGAAAGAAGGAAGTTTTTTCCTCTTGAGACCAAATTTCCATAA

Translation (856 aa):
MDEIKSQELNLEGQRKISPGSIKDSKTEASGNIAIRKSAKVIFALDETELKSKPEHTWKKNLFERMEARA
QAMQQKIIDKENLKKELEKKAEKKLPRDNLAKEWFNTDSMTLNNTAYLLDKLLPTLVPGVENMLTQVEKK
KVLTEADTPSKFDPINYLGEYLIRNNPNYIKDPGMSGYQRLMKEVTEDLKIYVPDTICNRVSKMKENVKQ
NRKQRESIDKIIVKVANTRKQALQEQFDEWILDPKGMIPKSVIQNVLQEFFQNPDFKLGSHCKQLDITDS
TEPRLNKMEFTEYISSHIKDLKSEMFEELLKHLCHSADEFREVIKADMRRQMFAELFLHCDHGKVGFLDR
QRTLALLELFYDHSSQMLRSLLRNPRQWPFIEFEEINLTELWGDMDNQKHIYEGFDKVLLEMNTLLSANH
ASKTQSKLLESPDQPKLNEQRTSTPSPNPPEQQRGVTAEQGPQRISIEEQQQGKKPTAEQELYIESVIEP
GTHTESTLEQGSSRRLLTEQETHRESTTEQGQHKGSIEGQGPRRVSVSEQGSSRESVAEQGSRRESIAEQ
DRHKGSVAEQGSRRMSAAEQGSLRESVIEEPYQKSEQGPYGEIISEEQEDIGSTSQSRKDSILKSTKYGE
PITSEYIEVPLQEKRSWEQTYEEEIFLSSELQEEVPTLSRKDHFPETTKKEVQKDKPCEPKSQKIEGKSW
SGEFFTCNWKMKYVTFEDEEQANLIYGNSRFTDLHSIIRNIQSCKEVKGRTAFNGVSFNLLQFVQLLETF
VGEDAPLSVSETLTSFFKEGYVETEQEKMNALEQVSLCRQAGVQWRNCSSLQPPTPGLKRSSHHRLLSNW
DYRERRKFFPLETKFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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