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Report for CCDS54180.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54180.1 Public Homo sapiens 18 CHMP1B 24 110 108 CCDS HistoryNCBI Gene:57132Re-query CCDS DB by CCDS ID:54180.1Re-query CCDS DB by GeneID:57132See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54180.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000526991.3 ENSP00000432279.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000526991.3Link to Ensembl Protein Viewer:ENSP00000432279.1Re-query CCDS DB by Nucleotide ID:ENST00000526991Re-query CCDS DB by Protein ID:ENSP00000432279
Original member Current member NCBI NM_020412.5 NP_065145.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020412.5Link to Protein Sequence:NP_065145.2Re-query CCDS DB by Nucleotide ID:NM_020412Re-query CCDS DB by Protein ID:NP_065145Link to BLAST:NP_065145.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065145.2 199 Q7LBR1 199 100% 0 0

Chromosomal Locations for CCDS 54180.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 11851512 11852111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGTCTAACATGGAGAAACACCTGTTCAACCTGAAGTTCGCGGCCAAAGAACTGAGTAGGAGTGCCAAAA
AATGCGATAAGGAGGAAAAGGCCGAAAAGGCCAAAATTAAAAAGGCCATTCAGAAGGGCAACATGGAAGT
TGCGAGGATACACGCCGAAAATGCCATCCGCCAGAAGAACCAGGCGGTGAATTTCTTGAGAATGAGTGCG
CGAGTCGATGCAGTGGCTGCCAGGGTCCAGACGGCGGTGACGATGGGCAAGGTGACCAAGTCGATGGCTG
GTGTGGTTAAGTCGATGGATGCGACATTGAAGACCATGAATCTGGAGAAGATTTCTGCTTTGATGGACAA
ATTCGAGCACCAGTTTGAGACTCTGGACGTCCAGACGCAGCAAATGGAAGACACGATGAGCAGCACGACG
ACGCTCACCACTCCCCAGAACCAAGTGGATATGCTGCTCCAGGAAATGGCAGATGAGGCGGGCCTCGACC
TCAACATGGAGCTGCCGCAGGGCCAGACCGGCTCCGTGGGCACGAGCGTGGCTTCGGCGGAGCAGGATGA
ACTGTCTCAGAGACTGGCCCGCCTTCGGGATCAAGTGTGA

Translation (199 aa):
MSNMEKHLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSA
RVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTT
TLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGTSVASAEQDELSQRLARLRDQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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