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Report for CCDS54196.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54196.1 Public Homo sapiens 19 ATP8B3 24 110 108 CCDS HistoryNCBI Gene:148229Re-query CCDS DB by CCDS ID:54196.1Re-query CCDS DB by GeneID:148229See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54196.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000525591.5 ENSP00000437115.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000525591.5Link to Ensembl Protein Viewer:ENSP00000437115.1Re-query CCDS DB by Nucleotide ID:ENST00000525591Re-query CCDS DB by Protein ID:ENSP00000437115
Original member Current member NCBI NM_001178002.3 NP_001171473.1 Accepted alive Link to Nucleotide Sequence:NM_001178002.3Link to Protein Sequence:NP_001171473.1Re-query CCDS DB by Nucleotide ID:NM_001178002Re-query CCDS DB by Protein ID:NP_001171473Link to BLAST:NP_001171473.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171473.1 1263 O60423-3 1263 100% 0 0

Chromosomal Locations for CCDS 54196.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 1783028 1783270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1784819 1784946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1785159 1785297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1785469 1785708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1787103 1787186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1788897 1789120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1789361 1789727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1789890 1789989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1790757 1790832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1791750 1791861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1791971 1792135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1795875 1795987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1796077 1796265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1796711 1796879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1796974 1797005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1799947 1800155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1800259 1800449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1801956 1802062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1802487 1802645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1805374 1805456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1805888 1805958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1806097 1806169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1806628 1806689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1807168 1807266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1808222 1808335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1809643 1809734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1810622 1810683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1811489 1811577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3792 nt):
ATGGGAGACTCCCCAGGCAGAGGGGCACCTGAGAGGAGGCACAAGGCCCAGCCTGGCCGGGCTAGGAAGT
ATGAATGGAGACCAGAAGGCCCCACCAGCATGGGCAGCCTCGGCCAGAGAGAAGATCTCCAAGATGAGGA
CAGGAACTCAGCATTCACCTGGAAGGTCCAGGCCAACAACCGTGCCTACAACGGGCAGTTCAAGGAGAAG
GTGATCCTGTGCTGGCAAAGGAAGAAATACAAGACCAATGTCATCCGCACGGCCAAGTACAACTTCTACT
CGTTCCTGCCGCTGAACCTGTACGAGCAGTTCCACCGCGTGTCCAACCTGTTCTTCCTCATCATCATCAT
CCTGCAGAGCATTCCCGACATCTCCACGCTGCCCTGGTTCTCGCTCAGTACCCCTATGGTCTGCCTCCTC
TTCATCCGTGCCACCCGGGACCTGGTGGACGACATGGGGAGACACAAGAGTGACAGAGCCATCAACAACA
GACCCTGCCAGATTCTGATGGGGAAGAGCTTCAAGCAGAAGAAATGGCAGGATCTGTGCGTGGGGGATGT
GGTCTGTCTCCGCAAGGACAACATCGTCCCAGCCGACATGCTCTTGCTGGCCAGCACGGAGCCCAGCAGC
CTGTGCTATGTGGAGACGGTGGACATTGACGGGGAGACCAACTTGAAGTTCAGACAGGCCCTGATGGTCA
CCCACAAAGAACTGGCCACTATAAAGAAGATGGCGTCCTTTCAAGGCACAGTGACGTGTGAGGCGCCTAA
CAGTCGGATGCACCACTTCGTGGGGTGCCTGGAATGGAATGACAAGAAATACTCCCTGGACATTGGCAAC
CTCCTCCTCCGAGGCTGCAGGATTCGCAACACAGACACCTGCTATGGACTGGTCATTTATGCTGATGGAT
ACATGTTTGTAGGTTTTGACACAAAAATTATGAAGAACTGTGGCAAGATCCATTTGAAGAGAACCAAGCT
GGACCTCCTGATGAACAAGCTGGTGGTTGTGATCTTCATCTCCGTGGTGCTTGTCTGCCTGGTGTTGGCC
TTCGGCTTCGGTTTCTCAGTCAAAGAATTCAAAGACCACCACTACTACCTCTCGGGGGTGCATGGGAGCA
GCGTGGCCGCAGAGTCCTTCTTCGTCTTCTGGAGCTTCCTCATCCTGCTCAGCGTCACCATCCCGATGTC
CATGTTCATCCTGTCCGAGTTCATCTACCTGGGGAACAGCGTCTTCATCGACTGGGACGTGCAGATGTAC
TACAAGCCGCAGGACGTGCCTGCCAAGGCCCGCAGCACCAGCCTCAACGACCACCTGGGCCAGGTGGAAT
ACATCTTCTCGGACAAGACGGGCACGCTCACGCAGAACATCTTGACCTTCAACAAGTGCTGCATCAGCGG
CCGCGTCTATGGGCCGGATTCAGAGGCCACGACCCGACCTAAGGAGAACCCCTACCTCTGGAACAAGTTC
GCCGACGGGAAGCTGCTCTTCCACAATGCGGCCCTGCTGCACCTCGTGCGGACCAACGGGGACGAGGCCG
TGCGGGAGTTCTGGCGCCTGCTGGCCATCTGCCACACGGTGATGGTGCGGGAGAGCCCCCGTGAGCGCCC
AGACCAGCTGTTGTACCAGGCGGCCTCCCCCGACGAGGGGGCGCTGGTCACCGCAGCCCGGAACTTCGGC
TACGTGTTCCTGTCCCGCACCCAGGACACCGTCACGATCATGGAGCTGGGGGAGGAACGGGTCTACCAGG
TCCTGGCCATAATGGACTTCAACAGCACGCGCAAACGGATGTCGGTGCTGGTTCGAAAGCCAGAGGGCGC
CATCTGCCTGTACACCAAGGGCGCCGACACGGTCATCTTCGAACGCTTGCACAGGAGGGGGGCAATGGAA
TTTGCCACAGAGGAGGCCTTGGCTGCCTTTGCCCAGGAGACCCTGCGGACACTGTGCCTGGCCTACAGGG
AGGTGGCTGAGGACATTTACGAGGACTGGCAGCAGCGCCACCAGGAGGCCAGCCTCCTGCTGCAGAACCG
GGCACAGGCCCTGCAACAGGTGTACAACGAGATGGAGCAGGACCTCAGGCTGCTGGGAGCCACAGCCATC
GAGGACAGACTCCAGGACGGTGTCCCTGAAACCATCAAATGTCTCAAGAAGAGCAACATCAAAATATGGG
TGCTCACCGGGGACAAGCAGGAAACGGCTGTGAACATCGGCTTCGCCTGCGAGCTGCTGTCAGAGAATAT
GCTCATTCTGGAGGAGAAGGAGATTAGCCGCATCCTGGAGACCTACTGGGAAAACAGTAACAACCTTCTA
ACCAGGGAGTCCCTGTCGCAGGTCAAGCTGGCCTTGGTCATTAACGGAGACTTCCTGGACAAACTGCTGG
TGTCCCTGCGGAAGGAGCCGCGCGCCCTGGCGCAGAACGTGAACATGGACGAGGCGTGGCAGGAGCTCGG
CCAGTCCAGGAGGGATTTCCTCTACGCCAGGCGCCTGTCCCTGCTGTGCCGGAGGTTCGGGCTCCCGCTG
GCTGCACCGCCAGCCCAGGACTCCAGAGCCCGCCGTAGCTCCGAGGTGCTGCAGGAGCGCGCCTTCGTGG
ACCTGGCGTCCAAGTGCCAGGCGGTCATCTGCTGCCGCGTGACGCCCAAGCAGAAGGCCCTGATCGTGGC
CCTGGTCAAGAAGTACCACCAGGTGGTGACCCTGGCCATCGGGGACGGTGCCAACGACATCAACATGATC
AAGACCGCGGACGTGGGCGTGGGGCTGGCGGGCCAGGAGGGCATGCAGGCAGTTCAGAACAGCGACTTCG
TGCTCGGCCAGTTCTGCTTCCTGCAGCGCCTCCTGCTGGTGCACGGCCGCTGGTCCTACGTGCGGATCTG
CAAGTTCCTGCGCTACTTCTTCTACAAGAGCATGGCCAGCATGATGGTGCAGGTCTGGTTTGCCTGCTAC
AACGGCTTCACCGGCCAGCCCCTGTATGAAGGATGGTTCCTGGCTCTTTTCAACCTCCTGTACAGCACCC
TGCCAGTTCTCTACATTGGGCTCTTTGAGCAGGACGTGAGCGCAGAGCAGAGCCTGGAGAAGCCGGAGCT
GTACGTGGTGGGGCAGAAGGACGAGCTCTTCAACTACTGGGTCTTCGTCCAAGCCATCGCCCATGGTGTG
ACCACCTCTCTGGTCAACTTCTTCATGACACTGTGGATCAGCCGCGACACGGCGGGACCCGCCAGCTTCA
GCGACCACCAGTCCTTTGCGGTCGTGGTGGCCCTGTCTTGCCTGCTGTCCATCACCATGGAGGTCATTCT
TATCATCAAGTACTGGACCGCCCTGTGCGTGGCGACCATCCTCCTCAGCCTTGGTTTCTACGCCATCATG
ACTACCACCACCCAGAGCTTCTGGCTCTTCAGAGTATCCCCCACGACCTTCCCGTTTCTGTATGCCGACC
TCAGCGTGATGTCCTCTCCCTCCATCCTGCTGGTGGTCCTGCTGAGTGTGTCCATAAACACCTTCCCTGT
CCTGGCCCTCCGAGTCATCTTCCCAGCCCTCAAGGAGCTACGTGCCAAGGAGGAGAAGGTGGAGGAGGGC
CCCAGCGAGGAGATTTTCACCATGGAGCCCTTGCCTCATGTACACCGGGAGTCTCGTGCCCGCCGTTCCA
GCTATGCTTTCTCCCACCGTGAGGGATATGCAAACCTCATCACTCAGGGCACAATTCTGCGGAGGGGACC
AGGGGTCAGCAGTGACATAGCATCTGAATCCCTAGACCCATCTGATGAAGAGGCAGCTTCGAGCCCAAAA
GAGTCACAGTGA

Translation (1263 aa):
MGDSPGRGAPERRHKAQPGRARKYEWRPEGPTSMGSLGQREDLQDEDRNSAFTWKVQANNRAYNGQFKEK
VILCWQRKKYKTNVIRTAKYNFYSFLPLNLYEQFHRVSNLFFLIIIILQSIPDISTLPWFSLSTPMVCLL
FIRATRDLVDDMGRHKSDRAINNRPCQILMGKSFKQKKWQDLCVGDVVCLRKDNIVPADMLLLASTEPSS
LCYVETVDIDGETNLKFRQALMVTHKELATIKKMASFQGTVTCEAPNSRMHHFVGCLEWNDKKYSLDIGN
LLLRGCRIRNTDTCYGLVIYADGYMFVGFDTKIMKNCGKIHLKRTKLDLLMNKLVVVIFISVVLVCLVLA
FGFGFSVKEFKDHHYYLSGVHGSSVAAESFFVFWSFLILLSVTIPMSMFILSEFIYLGNSVFIDWDVQMY
YKPQDVPAKARSTSLNDHLGQVEYIFSDKTGTLTQNILTFNKCCISGRVYGPDSEATTRPKENPYLWNKF
ADGKLLFHNAALLHLVRTNGDEAVREFWRLLAICHTVMVRESPRERPDQLLYQAASPDEGALVTAARNFG
YVFLSRTQDTVTIMELGEERVYQVLAIMDFNSTRKRMSVLVRKPEGAICLYTKGADTVIFERLHRRGAME
FATEEALAAFAQETLRTLCLAYREVAEDIYEDWQQRHQEASLLLQNRAQALQQVYNEMEQDLRLLGATAI
EDRLQDGVPETIKCLKKSNIKIWVLTGDKQETAVNIGFACELLSENMLILEEKEISRILETYWENSNNLL
TRESLSQVKLALVINGDFLDKLLVSLRKEPRALAQNVNMDEAWQELGQSRRDFLYARRLSLLCRRFGLPL
AAPPAQDSRARRSSEVLQERAFVDLASKCQAVICCRVTPKQKALIVALVKKYHQVVTLAIGDGANDINMI
KTADVGVGLAGQEGMQAVQNSDFVLGQFCFLQRLLLVHGRWSYVRICKFLRYFFYKSMASMMVQVWFACY
NGFTGQPLYEGWFLALFNLLYSTLPVLYIGLFEQDVSAEQSLEKPELYVVGQKDELFNYWVFVQAIAHGV
TTSLVNFFMTLWISRDTAGPASFSDHQSFAVVVALSCLLSITMEVILIIKYWTALCVATILLSLGFYAIM
TTTTQSFWLFRVSPTTFPFLYADLSVMSSPSILLVVLLSVSINTFPVLALRVIFPALKELRAKEEKVEEG
PSEEIFTMEPLPHVHRESRARRSSYAFSHREGYANLITQGTILRRGPGVSSDIASESLDPSDEEAASSPK
ESQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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